PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01482g04034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HSF | ||||||||
Protein Properties | Length: 514aa MW: 56904.7 Da PI: 6.0323 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118.7 | 3.4e-37 | 18 | 110 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+y++++d+++++++sws+++nsfvv++ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Peinf101Scf01482g04034.1 18 FLSKTYDMVNDPSTDSVVSWSKSNNSFVVWNVPEFAKDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 93 9****************************************************************999.........******** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 +g+k+ll++i r+k + Peinf101Scf01482g04034.1 94 LRGHKHLLKSISRRKPS 110 **************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.4E-40 | 12 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.98E-36 | 13 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-62 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-32 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MDGLNGNTAA IGNSPPPFLS KTYDMVNDPS TDSVVSWSKS NNSFVVWNVP EFAKDILPKY 60 FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGHKHL LKSISRRKPS QVQGHQQTPS 120 QVQNTSVGSC VEVGKFGIDE EVERLKRDKD VLMQELVKLR QQQQATDQHL QTVGQRVQLM 180 EKRQQQMMSF LAKAMQSPGF VAQLVHQQNG NTRRINGTNK KRRLPDQEEE NVAGNADNAL 240 PDGRMVSYQP SMNEAAKALL RQILNSNAPG KLDNGFKNRN GFLTNNALPP QNALESGATS 300 SRVSGVTLSE VLSTTSQSNL MSDSGFPFNS ISSVMSETQS STTVVHGEPK VPKLPKLDAL 360 HSHTEHNLPE FSQGQRIKSQ DTLGISGLER SETGSVPYID TPQGILDGIT TVGPDECSAD 420 TNVDVLLDDM PKLPAINDIF WDQILSASPL TGDTDDIGSL AMEDGLEKEE DFLGVQVNDW 480 DKLKHMHHLT EQMGLLSSAW MLCSGGHYKV VLKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 1 | 107 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 1 | 107 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 1 | 107 | 12 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016465973.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like | ||||
Swissprot | Q84T61 | 1e-152 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A1S3ZNY7 | 0.0 | A0A1S3ZNY7_TOBAC; heat stress transcription factor A-1b-like | ||||
STRING | XP_009623591.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5054 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-138 | heat shock factor 3 |
Publications ? help Back to Top | |||
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