PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01482g03021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 357aa MW: 39219.2 Da PI: 6.8333 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.2e-07 | 102 | 126 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg Peinf101Scf01482g03021.1 102 FKTKLCCKFRA-GVCPYITNCNFAHG 126 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.7 | 6.3e-06 | 180 | 203 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ f+ C+yGd+C+F H+ Peinf101Scf01482g03021.1 180 GRHCKKFYTEEGCPYGDTCTFLHD 203 5669*****9*************7 PP | |||||||
3 | zf-CCCH | 42.9 | 7.9e-14 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Peinf101Scf01482g03021.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-14 | 99 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-8 | 99 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.418 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-5 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-9 | 176 | 205 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-7 | 177 | 205 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 177 | 205 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.38 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 231 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-10 | 233 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-8 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDFMGEASFG GGSVIPDTYS NGSGFDNWGP GYSDQEVWAT EDDYRAWNTG PSSETPSNSN 60 QDGRHSQTQS GSEPPNKKSR NSQGADSQFT NYRSKAIGKM FFKTKLCCKF RAGVCPYITN 120 CNFAHGIEEL RKPPPNWQEI VAAHESERGG GVTLEPREEH QIPTVSSPEL RAEPQRSFKG 180 RHCKKFYTEE GCPYGDTCTF LHDEQSRARE SVAISVTPTV GGFNNATGAS PKPSNWKTRI 240 CNKWETTGYC PFGSKCHFAH GAAELHKYGG GLVEFEGNDS LPTSPDLKQG GGSFKTTEST 300 VPSTISGPYT DFYHLGPGVQ VQRASGIAQR PGQRVIQKWK GPDKISKIYG DWIDDIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764664.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q9LQM3 | 1e-123 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A1U7VQM6 | 0.0 | A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like | ||||
STRING | XP_009764664.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-126 | C3H family protein |