PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf01468g07025.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 226aa MW: 25723 Da PI: 9.087

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01468g07025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6e-31	148	205	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C vkk+ver a+dp++v++tYeg+H h Peinf101Scf01468g07025.1 148 LDDGYKWRKYGQKVVKDTQHPRSYYRCTQYNCGVKKRVERLADDPRMVITTYEGRHVH 205 59******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-32	133	206	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-28	140	206	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	143	208	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	148	207	IPR003657	WRKY domain
Pfam	PF03106	3.4E-24	149	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MLTTSQAMLS QSLLEDQDYM STQPGTFSFP PNNNMGSLPF GCNQALKTLF TIIPPSFADP 60 LNESTAPTQK EDLTNFLFGG SQLFLPRSSP NWACKGVTMM SSNNKRSGVG DHHLGVSAIN 120 KMKKIKSSRM NVREPRFSFK TMSDVDVLDD GYKWRKYGQK VVKDTQHPRS YYRCTQYNCG 180 VKKRVERLAD DPRMVITTYE GRHVHYPSHD DEEDSQASSQ HVFLYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	138	205	7	74	Probable WRKY transcription factor 4
2lex_A	2e-27	138	205	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782635.1	6e-92	PREDICTED: probable WRKY transcription factor 28 isoform X1
Refseq	XP_016452899.1	5e-92	PREDICTED: probable WRKY transcription factor 28
TrEMBL	A0A1S3YKZ1	1e-90	A0A1S3YKZ1_TOBAC; probable WRKY transcription factor 28
TrEMBL	A0A1U7X859	1e-90	A0A1U7X859_NICSY; probable WRKY transcription factor 28 isoform X1
STRING	XP_009782635.1	2e-91	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10376	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-51	WRKY DNA-binding protein 13