PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01452g09018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 734aa    MW: 81741.1 Da    PI: 5.2117
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01452g09018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-1772122155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr +  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +++g
  Peinf101Scf01452g09018.1  72 PVYRGVRKRN-SGKWVCEVREP---NKQSRIWLGTFPTAEMAARAHDVAAIAFRG 122
                               68*****888.8******9998...336***********************9998 PP
2AP254.33.5e-17295345155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr +  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +++g
  Peinf101Scf01452g09018.1 295 PVYRGVRKRN-SGKWVCEVREP---NKQSRIWLGTFPTAEMAARAHDVAAIAFRG 345
                               68*****888.8******9998...336***********************9998 PP
3AP252.11.6e-16509558155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr  k++g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Peinf101Scf01452g09018.1 509 PVYRGVR--KRNGKWVCEVREP---NKKSRIWLGSFPTAEMAARAHDVAAIALRG 558
                               68****6..779******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1272122IPR001471AP2/ERF domain
PROSITE profilePS5103222.77473130IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2073132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3173132IPR001471AP2/ERF domain
SMARTSM003801.8E-3073136IPR001471AP2/ERF domain
PRINTSPR003672.4E-87485IPR001471AP2/ERF domain
CDDcd000186.50E-3074132No hitNo description
PRINTSPR003672.4E-896112IPR001471AP2/ERF domain
PfamPF008472.0E-12295345IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-20296355IPR016177DNA-binding domain
PROSITE profilePS5103222.774296353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31296355IPR001471AP2/ERF domain
SMARTSM003801.8E-30296359IPR001471AP2/ERF domain
CDDcd000186.50E-30297355No hitNo description
PfamPF008475.9E-11509558IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-18510568IPR016177DNA-binding domain
PROSITE profilePS5103220.468510566IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-29510568IPR001471AP2/ERF domain
SMARTSM003801.0E-27510572IPR001471AP2/ERF domain
CDDcd000182.27E-28511568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MDIFGSYYSD TLPAASAPTF WPLDVPEYSS PISYNSSCSN NRANHSDEEV MLASNNPKKR  60
AGRKKFRETR HPVYRGVRKR NSGKWVCEVR EPNKQSRIWL GTFPTAEMAA RAHDVAAIAF  120
RGRSACLNFA DSAWKLPTPA SSDPKDIQKA AAEAAEAFRP LESEGVHSAG EESKEESTTP  180
ETAESMYFMD EEALFCMPGL LANMAEGLML PPPQCSEVGD HFMEADADMP LWNTLPAASA  240
PTFWPLDVPE YSSPISYNSS CSNNRANHSD EEVMLASNNP KKRAGRKKFR ETRHPVYRGV  300
RKRNSGKWVC EVREPNKQSR IWLGTFPTAE MAARAHDVAA IAFRGRSACL NFADSAWKLP  360
TPASSDPKDI QKAAAEAAEA FRPLESEGVH SAGEESKEES TTPETAESMY FMDEEALFCM  420
PGLLANMAEG LMLPPPQCSE VGDHFMEADA DMPLWNILPI ELPEYSSPMS DNSSCSNYRA  480
NHSDDEVMLA SNNPKKCAGR KKFRETRHPV YRGVRKRNGK WVCEVREPNK KSRIWLGSFP  540
TAEMAARAHD VAAIALRGRS ACLNFADSAW KLPIPASSNP KDIQKAAAEA AKAFRESGEE  600
SKEESSTRET PEKMFFMDEE ALFCMPELLA NMAEGLMLPP PSQCSDVGEH FMDADVDMPL  660
WNFVYYLSRA YICGRDEEET FKKGEMSFSI AQSFVSPSIH FDILEDVLDG RSIVMMSSVR  720
SDQFVPKILL RSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12713521271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8496791e-111EU849679.1 Solanum tuberosum AP2 domain CBF protein (CBF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274894.11e-105AP2 domain CBF protein
SwissprotQ9FJ937e-69DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A124RDC90.0A0A124RDC9_CYNCS; AP2/ERF domain-containing protein (Fragment)
STRINGPGSC0003DMT4000371221e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2539922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-62C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]