PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01416g02011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 220aa MW: 23389.4 Da PI: 9.5476 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C++aH++ Peinf101Scf01416g02011.1 31 KSKLCNKYNTAEGCKFGDKCHYAHSE 56 678*********************95 PP | |||||||
2 | zf-CCCH | 30.6 | 5.7e-10 | 187 | 211 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +f++ G C +G++C+FaHg Peinf101Scf01416g02011.1 187 FKTKMCANFSK-GSCTFGEKCHFAHG 211 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.2E-7 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-11 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-6 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.11E-15 | 87 | 165 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.1E-11 | 94 | 164 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 5.0E-16 | 95 | 164 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.047 | 95 | 159 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.81E-13 | 97 | 159 | No hit | No description |
Pfam | PF00013 | 5.2E-11 | 98 | 161 | IPR004088 | K Homology domain, type 1 |
SMART | SM00356 | 5.3E-4 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 187 | 216 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 187 | 211 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-14 | 187 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MNQISNMGAN PATPIGRNTG PFSDRPAPTM KSKLCNKYNT AEGCKFGDKC HYAHSEMEIG 60 KPAYDDFQAS GPPSRFSGYP RPSQPSPAAT NFGASASTSI SIDAALAGTI IGKNGVNSKQ 120 ICRLTGVKLS IKEHETDSNR RNIELQGTFD QINQASAMVR EIISNIGTPM GGPKVSAPFT 180 RGPVGPFKTK MCANFSKGSC TFGEKCHFAH GASELQRPLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265500.1 | 1e-142 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 3e-67 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A314L205 | 1e-141 | A0A314L205_NICAT; Zinc finger ccch domain-containing protein 14 | ||||
STRING | XP_009795947.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-45 | C3H family protein |