PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf01376g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 763aa MW: 85710.8 Da PI: 5.728

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01376g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.4	1e-18	674	732	42	100
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + ll++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Peinf101Scf01376g00003.1 674 SVDLLQKLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDILQTQLALAQAE 732 5789**************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.392	627	733	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-17	675	730	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MAGENEANFR ICTSVSEALS YMPCPLQYTQ PSNHNQLFVF WSQHNDEFPT IFFPTTGDTT 60 VYPDTVKEKI THALKNAYIS DYHACWLVQF WAPVTTNNQI FLTACDLPFG LTKLHEGLCL 120 YRSECLKYRI PIGTDNSENE NQLGPTGRVF KHALPEMSPD VSRYSATDYP QLGLALTAGL 180 GNYLAVPVFE PLSNQCTGVL EIMGDKKGSF SQELVQMTYE MLKAFRVDCP HKVDLRSSNM 240 YDHPDRKSFK GLERALKELE EQLNFICRTH QLPLAQTWLP ILDGGNIERF MTTKEQFCIC 300 TSAGYEFRAA CDMFHLGKSQ GVVGRAFLSR SSCFCSDITK LRMSEYPLAH VAHKVGFHGS 360 FAICLQSSYT GDYVYLLEFF LPRDNKSDCR SPQTMLNMLL TTMKRQFQSF KLASGRELGE 420 KLLVEVIPIP SDDGLNSFEI CQKAKYSSDI EAIASKKKIL WLDALNRSLN TGSTVNSRPE 480 SIDVTTSTTA ANTITEVRNV RNQANRVVFN SSEAESMMKI SEGQYRINST VLRQSGGAEV 540 NGSKTTIACQ SAPSCFGTEH LQVNDMNCDE LESAKGAYRH FEETSAGGDQ SYHDTTTSLN 600 HATRLTTQAA GVQEESPIPR MCSNYPLPGF SADELAKLAK VSKLFEPQNL QDSHRFGDFD 660 SLGENFDDDK LRKSVDLLQK LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD 720 ILQTQLALAQ AEVVQVRMQQ YLFTMDKVKD DERFRLDRES LWE

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MAGENEANFR ICTSVSEALS YMPCPLQYTQ PSNHNQLFVF WSQHNDEFPT IFFPTTGDTT  60
VYPDTVKEKI THALKNAYIS DYHACWLVQF WAPVTTNNQI FLTACDLPFG LTKLHEGLCL  120
YRSECLKYRI PIGTDNSENE NQLGPTGRVF KHALPEMSPD VSRYSATDYP QLGLALTAGL  180
GNYLAVPVFE PLSNQCTGVL EIMGDKKGSF SQELVQMTYE MLKAFRVDCP HKVDLRSSNM  240
YDHPDRKSFK GLERALKELE EQLNFICRTH QLPLAQTWLP ILDGGNIERF MTTKEQFCIC  300
TSAGYEFRAA CDMFHLGKSQ GVVGRAFLSR SSCFCSDITK LRMSEYPLAH VAHKVGFHGS  360
FAICLQSSYT GDYVYLLEFF LPRDNKSDCR SPQTMLNMLL TTMKRQFQSF KLASGRELGE  420
KLLVEVIPIP SDDGLNSFEI CQKAKYSSDI EAIASKKKIL WLDALNRSLN TGSTVNSRPE  480
SIDVTTSTTA ANTITEVRNV RNQANRVVFN SSEAESMMKI SEGQYRINST VLRQSGGAEV  540
NGSKTTIACQ SAPSCFGTEH LQVNDMNCDE LESAKGAYRH FEETSAGGDQ SYHDTTTSLN  600
HATRLTTQAA GVQEESPIPR MCSNYPLPGF SADELAKLAK VSKLFEPQNL QDSHRFGDFD  660
SLGENFDDDK LRKSVDLLQK LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD  720
ILQTQLALAQ AEVVQVRMQQ YLFTMDKVKD DERFRLDRES LWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	628	735	30	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	628	735	30	113	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767935.1	0.0	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_009767936.1	0.0	PREDICTED: protein NLP7-like isoform X2
Refseq	XP_009767937.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767938.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767939.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767940.1	0.0	PREDICTED: protein NLP7-like isoform X3
TrEMBL	A0A1U7VIP6	0.0	A0A1U7VIP6_NICSY; protein NLP7-like isoform X3
TrEMBL	A0A1U7W104	0.0	A0A1U7W104_NICSY; protein NLP7-like isoform X1
STRING	XP_009767935.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13675	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-66	NIN like protein 7