PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01369g01003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 703aa    MW: 76485 Da    PI: 6.454
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01369g01003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09274294526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C++f++ GtC++Gd C +aHg
  Peinf101Scf01369g01003.1 274 PCPDFRK-GTCQRGDACEYAHG 294
                               8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.22E-1828180IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-1830170IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-867143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002174104IPR002110Ankyrin repeat
PROSITE profilePS5029717.05174181IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.797498IPR002110Ankyrin repeat
CDDcd002041.57E-1476170No hitNo description
SMARTSM002480.076109141IPR002110Ankyrin repeat
PROSITE profilePS5008810.553109144IPR002110Ankyrin repeat
SMARTSM003561.6E-5269295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4273296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873274296IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6274294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4302332IPR000571Zinc finger, CCCH-type
SMARTSM0035692304327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCSGSRSKVC TELAMEAEIQ KQKDHVPDFS QLLELSASDD ITNFKKAVEE EGHDINEVGL  60
WYGRRIGVKK MGYEERTPLM IAATFGSKQV LRYMLEKGCA DVNQACGSDK ATALHCVITG  120
GSTALLEVVK LLLDASADVN LVDSNGKRPA DLISSRSCLG SRRKMLEYML GGGSNPEEGS  180
ELIEQIISEQ AEEQLLLTPT VCKYGSEKKE YPADPSLPDI KNGIYGTDDF RMYIFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GTCQRGDACE YAHGIFECWL  300
HPAQYRTRMC KDETSCNRRV CFFAHKPEEL RPLYPSTGSA VPSPRSYSTG ASALDITAIT  360
PLALGSPSVM MPPTSTPPMS PSAGAPSVGG SLWPCQSTLA TPTLQLPVSR LKSAISARDV  420
ELDNSLLGFE SHHLRQDQLM DDLSALSSPS GWNNSSARAA AFAASSSDRN SELGRHGGMK  480
PTNLDDIFST LDSKILSQLQ GLTLDGVSPQ LQSPKGMQML QNMNQQLMTS YSSGHSSPSF  540
RTSSSSFGID PSCAATAALS SRSAAFAKRS QSFIDRSTVS HLSGISSSIS AASPTPSNLS  600
SWGSPDGKLD WGIQKEELNK LRKSASFGLR SSGSRLPMSE PSNLDSSIEP DVSWVQSLVK  660
DSPAVSSGKF AMENQQYHLN TSRGSETIPT WVDLYMEQEQ TVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795434.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U7Y8560.0A0A1U7Y856_NICSY; zinc finger CCCH domain-containing protein 66-like isoform X1
STRINGXP_009795434.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-155C3H family protein