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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01368g06029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 694aa MW: 77605.1 Da PI: 5.827 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 7.8e-06 | 128 | 148 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H Peinf101Scf01368g06029.1 128 VPCIFFQQ-GFCLKGDRCPFFH 148 79******.***********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.122 | 28 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 5.4E-11 | 29 | 83 | No hit | No description |
SMART | SM00356 | 0.0023 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.455 | 59 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.73 | 61 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 126 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.086 | 129 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MVGPTPPQLQ IQPPSTVAAM SSAEEEALKR NTDCVYFLAS PLTCKKGSEC EYRHSDVARL 60 NPRDCWYWLN GSCLNPKCGF RHPPLDGLLG AQVPTPTGSS VPPVSSVPPV ASVTPTPQVP 120 YASSKQGVPC IFFQQGFCLK GDRCPFFHAP ISVSNKAPPH PVSTASTEKT TLKKAFGGLE 180 KCVQVKKISP ANTWKSSDLP VQAQPVGKLG TPLSKNDAAF DENVLPPNSV VDVSHHRNRP 240 KIVPPTNGNP VSRSSRVQQS VGFDDHSIQN KDDDVSRELS PGFDVLVDDE LRGTDFYHGE 300 DQYGRNEGRN EYGIGADVDQ DMYHDVYGYE SHDRLLGRSG RVEHRASSER IQGQSAHLER 360 RRYGRAHSPE EVRESDLRHR LSKQKRVNGL RSVISHDYAS EKHVEGRGYQ SSRRDRQDSS 420 LTGGRLRGRI KLPSRSSSPT NGTDMRLDRE MDRARDRGRI SLERPQLFSQ QGRLRDRIKG 480 RVQEDLNNAG RNNSGPRLRR DISENNSDFT GPRRLAELKG RKTTGTNEQN ADEQQALGKR 540 KFQKRDGYQQ GGGDVSFEGP MPLQEILKRK RRSETGMTSD KSEDYQHERK DLGQKEDSDL 600 PSDEKNCHQE PASADDQSLL HHVANEVEAE EGMIEEDADD QDPEGHDQRD YDYEQVDGED 660 YNLDEGENAD AGEEYLDEDD DDDDFAKKMG VVFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759890.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A1U7VDI3 | 0.0 | A0A1U7VDI3_NICSY; zinc finger CCCH domain-containing protein 17-like | ||||
STRING | XP_009759890.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |