PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01326g02009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 200aa    MW: 21198.2 Da    PI: 7.9581
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01326g02009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601071.5e-3325119197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v ++   q
  Peinf101Scf01326g02009.1  25 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVVTL---Q 106
                               7***********************9989*************************************************9765...5 PP

                    DUF260  85 qqleqlkaelall 97 
                                +l+ ++a l++l
  Peinf101Scf01326g02009.1 107 AELAYVQARLSTL 119
                               5555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.91124126IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3225119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSGCGGSGL YSNNVVAGGG AGGGPCGACK FLRRKCVRGC IFAPYFDSDQ GTAHFAAVHK  60
VFGASNASKL LLRIPAHKRL DAVVTLCYEA LARVRDPIYG CVVTLQAELA YVQARLSTLH  120
HLPIPPVPQP QSPSPTGLQS SSDLFCTSSS ISSSNMDPQL DIIGLSDALD QELDNCDLHT  180
LAREFVSRHL PGVRFRPSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-32221208108LOB family transfactor Ramosa2.1
5ly0_B3e-32221208108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803301.11e-97PREDICTED: LOB domain-containing protein 19-like
RefseqXP_016469456.11e-97PREDICTED: LOB domain-containing protein 19-like
SwissprotO813222e-59LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3ZYS93e-96A0A1S3ZYS9_TOBAC; LOB domain-containing protein 19-like
TrEMBLA0A1U7YMT43e-96A0A1U7YMT4_NICSY; LOB domain-containing protein 19-like
STRINGXP_009803301.16e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.19e-55LOB domain-containing protein 19