PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01325g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 235aa MW: 26408.7 Da PI: 8.5669 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.8 | 1.4e-29 | 90 | 142 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +v+Y eClkNhAa++Gg+a DGC+Efmps geegt +alkC+AC CHRnFHR+ Peinf101Scf01325g00008.1 90 GVKYMECLKNHAAAIGGNARDGCCEFMPS-GEEGTLEALKCSACHCHRNFHRKL 142 689*************************9.999*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-26 | 91 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.5E-27 | 92 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-20 | 92 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.223 | 93 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 182 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.56E-12 | 182 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.6E-20 | 186 | 235 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSNISTQVVA LNNNNNNNNN NKSSNIEDGN YPNENGSQAM EVHDQERVIH EEPLSEGNSK 60 KYMVMVRNSS TPFGYNKAGG NNDNIIDEGG VKYMECLKNH AAAIGGNARD GCCEFMPSGE 120 EGTLEALKCS ACHCHRNFHR KLLQALEQRK ISYKNGIITS PTSDSDDGKE GAGFMALKRP 180 CQQAIKKRFR TKFTREQKEK MFNFAEKAGW KIQKLDDSVI HQFCQELGIK RRVLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-17 | 187 | 235 | 18 | 66 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510094.1 | 4e-57 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_020230704.1 | 5e-57 | zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 6e-50 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A2N9F4F3 | 7e-58 | A0A2N9F4F3_FAGSY; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P11020_001 | 7e-58 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18379 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 6e-52 | homeobox protein 21 |
Publications ? help Back to Top | |||
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