PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01317g10005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 417aa    MW: 46321.5 Da    PI: 6.3807
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01317g10005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.14.4e-40602132135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssss 69 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ +                 +   
  Peinf101Scf01317g10005.1  60 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPPLeafpdtmqlsdekrssaG--- 141
                               689*************************************************************655555544443332221... PP

                       TCP  70 aseceaesssssasnsssg..................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                             +++ +                  ++++++++s++s++s+ s l+l++ esr kar+ra+er  ek + k++
  Peinf101Scf01317g10005.1 142 -------------TEPGFDsadvemdndddpnynyqqQQQQQQPCSSNSETSKGSGLSLSRsESRIKARERAKERAVEKEKEKEN 213
                               .............211111333444444455666775555666699999**************************9999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-4161210IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18162120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68190209IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEMEEIQKFS RISNKIGNKV DEEYQDDEED VGEVKKSSLC DVARLCGWPS SRIVRVSRAS  60
GGKDRHSKVW TSKGLRDRRV RLSVNTAIQF YDLQDRLGYD QPSKAVEWLL KAAAPSISEL  120
PPLEAFPDTM QLSDEKRSSA GTEPGFDSAD VEMDNDDDPN YNYQQQQQQQ QPCSSNSETS  180
KGSGLSLSRS ESRIKARERA KERAVEKEKE KENESTVVAH HQNMHPSSSF TELLTGGITN  240
NNNNNNNTSP VHQNTQRQWS NNPLEYFTSG LLGPSTTRGI NNSTGYSGQV QLGNPLQPMF  300
SITGDHQPQL QHFPFNTQTS NTNEYNLNFS ISSASSASSN AGYNRGTLQS NSSASPSIMP  360
PHFQRFTPID GSQSLFLGTT NAASSDNNHQ HIMSVYDARL QLFYGNGHSD HKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2367121155Putative transcription factor PCF6
5zkt_B3e-2367121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1752390.0KJ175239.1 Petunia x hybrida cultivar W115 transcription factor TCP6 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591865.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A0X7YPS00.0A0A0X7YPS0_PETHY; Transcription factor TCP6
STRINGXP_009591865.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2