PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01317g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 319aa    MW: 36732.5 Da    PI: 4.7714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01317g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.44.8e-5866312130374
                      GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrl 213
                               +aLa+R++++p+l++T+v  +++  +  ++e+++r++kfA+ +gvpfefnv+   ++l++l+ e+L+v+ +Ea+aVn++ +l ++
  Peinf101Scf01317g00011.1  66 EALATRNDETPHLKLTVVITENTLVNSVMKEVAQRMEKFARLMGVPFEFNVIgGLNHLKELTKENLNVQADEAVAVNCIGSLRKV 150
                               69******************9999***************************97788****************************9 PP

                      GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                     +e+ r ev+++++sl+Pkvv++ve+++d   ++++F++ f e+l++y+  f++l++++p++s+er ++Ere  +r+iv 
  Peinf101Scf01317g00011.1 151 A-----VEE-RGEVIRMLQSLNPKVVTIVEHDVDFssTRNDFVKCFEECLRFYTLYFEMLDENFPPTSNERLMIERE-CSRSIVR 228
                               8.....444.89********************998545679************************************.89***** PP

                      GRAS 297 vvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSaW 373
                               v+ac  +      er+e+  +W++rl+e GF+p pl+++a +++k+ll+++k  g+++      ++s  ++l+W+++p+v++SaW
  Peinf101Scf01317g00011.1 229 VLACDDQVdegDCERRERGIQWSQRLQE-GFSPFPLNDDALDDVKSLLKRYK-AGWSLVlpqedQDSPGIYLTWREEPVVWASAW 311
                               ****8765224679999999*****975.***********************.666665556556688999************** PP

                      GRAS 374 r 374
                               +
  Peinf101Scf01317g00011.1 312 K 312
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.7271288IPR005202Transcription factor GRAS
PfamPF035141.7E-5566312IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MQNPNQQQPH DQNSSRSQSP DYGEPVSDAK WASRLLRECA TAISEKNSTK IHHLLWMLNE  60
LASPYEALAT RNDETPHLKL TVVITENTLV NSVMKEVAQR MEKFARLMGV PFEFNVIGGL  120
NHLKELTKEN LNVQADEAVA VNCIGSLRKV AVEERGEVIR MLQSLNPKVV TIVEHDVDFS  180
STRNDFVKCF EECLRFYTLY FEMLDENFPP TSNERLMIER ECSRSIVRVL ACDDQVDEGD  240
CERRERGIQW SQRLQEGFSP FPLNDDALDD VKSLLKRYKA GWSLVLPQED QDSPGIYLTW  300
REEPVVWASA WKPREKSIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-7266313164420Protein SHORT-ROOT
5b3h_E7e-7266313164420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236790.11e-160PREDICTED: protein SHORT-ROOT-like
TrEMBLA0A1J6KMC51e-159A0A1J6KMC5_NICAT; Protein short-root
STRINGXP_009785856.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.12e-72GRAS family protein