PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 302aa MW: 33152 Da PI: 6.9773

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01294g06004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.7e-30	99	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Peinf101Scf01294g06004.1 99 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 152 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	96	155	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-20	96	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-30	98	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	100	152	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	102	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MREEDSNWFA KWEEELPKPE ELMPLSQSLI TPDLAIAFDI PNPTSPNPQT KQQQLNLSPH 60 VVPSSQTQPN SSAEFESAEL NGTGGGGGGS DEPARTLKRP RLVWTPQLHK RFVDAVAHLG 120 IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SSNGNNASGA GVVDTAMDNL 180 FASSPVPPHF LQHQGRGNNS EHFMPFVPVT PMQHHHHMGV VVGHHPQVQQ QYRQFGSPAA 240 NGHFDHPFLS RQSQQQQQVQ RMGTSSVHNG STPVVSSYVD DVDSSAAANG RKVLTLFPTG 300 DD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-32	99	155	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	5e-97	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543941.1	1e-154	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	4e-62	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A2G2VAZ0	1e-162	A0A2G2VAZ0_CAPBA; Two-component response regulator ARR1
STRING	PGSC0003DMT400018485	1e-151	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	9e-72	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]