PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01294g05037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27548.2 Da PI: 6.6744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.6e-12 | 66 | 112 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+ll + K++Ka+ L k+v+ +++L Peinf101Scf01294g05037.1 66 KNHKEAERRRRERINSHLDRLRTLLSCN-----SKMDKATLLAKVVQRVREL 112 78***********************997.....7************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.256 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 66 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.18E-4 | 66 | 115 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 66 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-14 | 67 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-11 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQQQDLLENL DFCNYLAKNK SNEMGEYGFD IQAIKSFCSS SFYPHLEFQE TVESTTPEAR 60 AIAASKNHKE AERRRRERIN SHLDRLRTLL SCNSKMDKAT LLAKVVQRVR ELKEQTSEIM 120 QLETNFPSET DEITVLSNDY LADGRILIKA SLCCDDRFDL IPDLIETLKS LGLSPLRAEM 180 VTLGGRIRNV IVLAADKDHS DDESLLFLRD ALRTIVQRSS YGTVERSKRR RVLDHGTTRY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | ERRRRE |
2 | 227 | 231 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 8e-71 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 8e-71 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602423.1 | 1e-142 | PREDICTED: transcription factor bHLH106-like | ||||
Refseq | XP_016478079.1 | 1e-142 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 2e-62 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1S4AN70 | 1e-141 | A0A1S4AN70_TOBAC; transcription factor bHLH106-like | ||||
STRING | XP_009602423.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12841 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-64 | bHLH family protein |
Publications ? help Back to Top | |||
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