PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01278g07021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family YABBY
Protein Properties Length: 161aa    MW: 17884.3 Da    PI: 8.578
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01278g07021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY140.51.9e-43121531161
                     YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 
                               +d+++sse+ Cyv+CnfC+t+lav +P++ l+ +vtv+CGhC++l           l+a   l+ +  ++++  + + + ++k+ 
  Peinf101Scf01278g07021.1  12 MDLVQSSEHFCYVRCNFCSTVLAVGIPYKRLLDTVTVKCGHCSNLSF---------LSARPPLQGQCLDHQTSLQDFCG-EFKKG 86 
                               57899**************************************9744.........34444444444333322222221.12211 PP

                     YABBY  86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                                 +++s+++       s++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn +
  Peinf101Scf01278g07021.1  87 --QSSSSTS-------STSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVS 153
                               ..1122222.......2345566799999*********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.0E-5017152IPR006780YABBY protein
SuperFamilySSF470953.01E-799150IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNSSHPAGSC SMDLVQSSEH FCYVRCNFCS TVLAVGIPYK RLLDTVTVKC GHCSNLSFLS  60
ARPPLQGQCL DHQTSLQDFC GEFKKGQSSS STSSTSSEPL SPKAPFVVKP PEKKHRLPSA  120
YNRFMKEEIQ RIKAANPEIP HREAFSAAAK NVSFMHDYSY F
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7398830.0KJ739883.1 Petunia axillaris subsp. axillaris CRC2 (CRC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263611.13e-83PREDICTED: protein CRABS CLAW isoform X2
SwissprotQ76EJ04e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A075M8X64e-87A0A075M8X6_PETAX; CRC2
STRINGVIT_01s0011g00140.t017e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.15e-55YABBY family protein