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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01278g07017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 487aa MW: 54298.4 Da PI: 7.4715 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.6 | 8.3e-24 | 212 | 263 | 1 | 52 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrf ++ Peinf101Scf01278g07017.1 212 VCQVHGCSKDLSSSKDYHKRHKVCDEHSKTAIVVVNGIEQRFCQQCSRFLDM 263 6************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-24 | 207 | 261 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.255 | 210 | 287 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.1E-22 | 211 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-18 | 213 | 263 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MEPLSYALEG RGFMFSDNVE LPVDSLARSR NSVKEWNLNP FCDVDKSICG TSQEINESTE 60 FLDSGIADIL KKSAGRTPRS MFSFEPIHGE MELGAMFNHS GTKSNTPMSS QIDLKLEELT 120 DYGDARTSQS SKESSVLSSP ERPLPTGKAQ TKSSHSRFPT SQGHDQREDE SIVHREVKSN 180 QSLKRNSALS SVNSSVQGKK LRTTNLHSEV PVCQVHGCSK DLSSSKDYHK RHKVCDEHSK 240 TAIVVVNGIE QRFCQQCSRF LDMTSQRRVP FLFPEILPGS FFYQENNDSK HLKSEHKPFC 300 ISELAMSVTS GQSSAKNIKH QYGTRKHDRS KVHFGATLSV QEFSAGQNSS CALSLLSAHS 360 QNLLHNSTDI SPTPPWMVKG NNYSYIKGDH HNKSPKSTTP VELYSSEVVE QDGVLQVPDS 420 EAVSFEIQRN RHDQKSNSIN SKNFLSPGCA PTMDLVQLSS HLQRVEQQKN SVQVKQENDI 480 FCSFTSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 6e-16 | 213 | 260 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073294 | 1e-163 | LC073294.1 Nicotiana tabacum NtabSPL6-6 mRNA for squamosa promoter binding protein NtabSPL6-6, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074864.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2K9ZXJ2 | 0.0 | A0A2K9ZXJ2_PETHY; Squamosa promoter binding-like protein 6a | ||||
STRING | Solyc05g012040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 7e-28 | SBP family protein |