PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01252g02024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27287.3 Da PI: 4.6861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEd +l+ +v+++G +W+ +++ g Peinf101Scf01252g02024.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAG 45 799*****************99****999988 PP | |||||||
2 | Myb_DNA-binding | 28.5 | 3.7e-09 | 132 | 163 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEd +l+ +v++ G +W+ +++ g Peinf101Scf01252g02024.1 132 KGTWTPEEDRKLAAYVTKNGCLNWRQLPKHAG 163 799***************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 6 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.496 | 9 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-7 | 11 | 43 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-7 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00196 | 16 | 46 | No hit | No description |
PROSITE profile | PS50090 | 6.493 | 127 | 187 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.19E-7 | 128 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2 | 131 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 131 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-7 | 132 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00105 | 134 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVRTPCRDEN GRKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGDSHMS PKQSISEELS 60 SNTTDYQQQD VASVIREEEL YHVEALAEIS GNFWTEPFLL DSFSSRFDFR APSIDCGLMV 120 RTPCRDEYGR KKGTWTPEED RKLAAYVTKN GCLNWRQLPK HAGSQWSLKQ SSSEEISSCT 180 PDYQQLDIAS DIREVKVFEE EAYLAESCGS FWTEPFVVDS FSSRLHDCLA PSIDFEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 5e-41 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-13 | myb domain protein 93 |