PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01234g01019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 94aa    MW: 10557 Da    PI: 5.0638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01234g01019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-111450136
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS- CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRt 36
                              rg+WT+eEd +++ +v+ +G g+W++++++ g  ++ 
  Peinf101Scf01234g01019.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGmSNKE 50
                              89****************************9975555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-13554IPR009057Homeodomain-like
SuperFamilySSF466894.74E-11855IPR009057Homeodomain-like
PROSITE profilePS5129411.028966IPR017930Myb domain
PfamPF002491.9E-81449IPR001005SANT/Myb domain
CDDcd001671.53E-61645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRPPCCDKT NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGMSNKE NPSCVQVTQV  60
EEKKSVDSFV DNILARDKQM QLDYPPLLDV YLDY
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606135.19e-26PREDICTED: transcription factor MYB35
RefseqXP_016441905.19e-26PREDICTED: transcription factor MYB35-like
RefseqXP_016471810.15e-26PREDICTED: transcription factor MYB35-like
SwissprotQ9LSI74e-22MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A1S4A5C41e-24A0A1S4A5C4_TOBAC; transcription factor MYB35-like
STRINGXP_009606135.13e-25(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-24MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]