PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01208g06004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Dof

Protein Properties

Length: 276aa MW: 30050.3 Da PI: 8.5729

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01208g06004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	26	87	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Peinf101Scf01208g06004.1 26 KDQAVNCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNRRSSS 87 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	20	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	27	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAAEIAPANV ITCSRPETLE KKRPDKDQAV NCPRCNSINT KFCYYNNYSL TQPRYFCKTC 60 RRYWTEGGTL RNVPVGGGSR KNRRSSSVNS SSISSQKLPD PNPNPNVSHQ NPDKISIVGR 120 NQDLNLGFQT YVAHDHQFHG TPHFLELPKM DSSNNANNHL GSTPISALEL FRTGIASGGF 180 TSFISSPALD LNALYTSGFP FQELKPTAGN SDHAAAALIS YSNGVQENGG TRNMFPLGGL 240 KQFSGTSEVD NHQDTNKGLE NSTAGYWNGM LGGGPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233120	2e-50	AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence.
GenBank	HG975440	2e-50	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	2e-50	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760286.1	1e-129	PREDICTED: dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_016463171.1	1e-129	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
TrEMBL	A0A1S3ZFV5	1e-128	A0A1S3ZFV5_TOBAC; dof zinc finger protein DOF2.5-like isoform X2
TrEMBL	A0A1U7V5N1	1e-128	A0A1U7V5N1_NICSY; dof zinc finger protein DOF2.5 isoform X1
STRING	XP_009760286.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-52	Dof family protein