PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 827aa MW: 91000 Da PI: 6.2595

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01203g01012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Peinf101Scf01203g01012.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5678*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.677	13	77	IPR001356	Homeobox domain
SMART	SM00389	6.8E-16	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-17	17	79	IPR009057	Homeodomain-like
CDD	cd00086	1.22E-16	18	78	No hit	No description
Pfam	PF00046	1.6E-16	19	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.9E-19	20	76	IPR009057	Homeodomain-like
CDD	cd14686	8.21E-6	70	109	No hit	No description
PROSITE profile	PS50848	26.172	153	381	IPR002913	START domain
CDD	cd08875	3.02E-79	157	372	No hit	No description
SMART	SM00234	7.5E-40	162	372	IPR002913	START domain
Pfam	PF01852	1.3E-53	163	371	IPR002913	START domain
SuperFamily	SSF55961	1.28E-37	163	373	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.2E-22	163	368	IPR023393	START-like domain
Pfam	PF08670	3.4E-50	684	826	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MAVTSTYKDS KLAMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ 120 QTQNAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV 180 EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLDPT RVSEILKDRP SWFRDCRTVD 240 VLNVMSTGNG GTIELLYMQL YAPTTLAPGR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP 300 SMPPVQNFVR AEMLPSGYLI RPCEGGGSII HIVDHIDLEP WSVPEVLRPL YESSTVLSQR 360 TTMAALRHLR QISQEISQPT VSGWGRRPAA LRALSQRLSK GFNEAVNGFT DEGWSLLESD 420 GIDDVTILVN SAPSKLMGAN LSYANGFPSM SSAVLCAKAS MLLQNVPPAI LLRFLREHRS 480 EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQFMEVIRL ESIGHYQEDM IMPGDIFLLQ 540 LCSGVDENAV GTCSELIFAP IDASFADDAP LLPSGFRIIP LDSKSDSSSP NRTLDLASTL 600 EVGPAGNRLS GDYSKKSGST KSVMTIAFQF AFEIHLQENI AAMARQYVRS IISSVQRVAL 660 ALSPSHLGSV PGLRSPPGTP EAQTLARWIC QSYRFFLGTE LLKSVSGGSE SILKELWNHS 720 DALMCCSLKA LPLFTFANEA GLDMLETTLV ALQDITLEKI FDDNGRKTLF SELPQITQQG 780 FACLQGGICL SSMGRPISYE RAVAWKVLND EENPHCICFM FINWSFV

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MAVTSTYKDS KLAMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQNAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLDPT RVSEILKDRP SWFRDCRTVD  240
VLNVMSTGNG GTIELLYMQL YAPTTLAPGR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP  300
SMPPVQNFVR AEMLPSGYLI RPCEGGGSII HIVDHIDLEP WSVPEVLRPL YESSTVLSQR  360
TTMAALRHLR QISQEISQPT VSGWGRRPAA LRALSQRLSK GFNEAVNGFT DEGWSLLESD  420
GIDDVTILVN SAPSKLMGAN LSYANGFPSM SSAVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQFMEVIRL ESIGHYQEDM IMPGDIFLLQ  540
LCSGVDENAV GTCSELIFAP IDASFADDAP LLPSGFRIIP LDSKSDSSSP NRTLDLASTL  600
EVGPAGNRLS GDYSKKSGST KSVMTIAFQF AFEIHLQENI AAMARQYVRS IISSVQRVAL  660
ALSPSHLGSV PGLRSPPGTP EAQTLARWIC QSYRFFLGTE LLKSVSGGSE SILKELWNHS  720
DALMCCSLKA LPLFTFANEA GLDMLETTLV ALQDITLEKI FDDNGRKTLF SELPQITQQG  780
FACLQGGICL SSMGRPISYE RAVAWKVLND EENPHCICFM FINWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016537761.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1U8DUC4	0.0	A0A1U8DUC4_CAPAN; homeobox-leucine zipper protein ATHB-15 isoform X2
STRING	PGSC0003DMT400074934	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]