PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01201g03016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 479aa    MW: 53467.7 Da    PI: 7.8092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01201g03016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-3175132260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgy+WrKYGqK+vkgs+fprsYY+Ct+++Cpv+kkve++  +++v+ei+Y+g Hnh+k
  Peinf101Scf01201g03016.1  75 DDGYTWRKYGQKHVKGSKFPRSYYKCTQQNCPVRKKVECAP-NGQVIEIVYNGAHNHPK 132
                               8****************************************.***************85 PP
2WRKY105.13.6e-33262319259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k v++tYeg+Hnhe
  Peinf101Scf01201g03016.1 262 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCIVRKHVERASDDLKSVITTYEGKHNHE 319
                               8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2761132IPR003657WRKY domain
SuperFamilySSF1182901.2E-2472132IPR003657WRKY domain
SMARTSM007744.2E-3474132IPR003657WRKY domain
PfamPF031064.9E-2575131IPR003657WRKY domain
PROSITE profilePS5081122.05675133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-35246321IPR003657WRKY domain
SuperFamilySSF1182902.22E-28254321IPR003657WRKY domain
PROSITE profilePS5081137.78256321IPR003657WRKY domain
SMARTSM007745.2E-37261320IPR003657WRKY domain
PfamPF031063.5E-25262319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSSPPCRPAF LTIPPGISPA ALLDSPKSMI PIETNVPQTL NSNKQIPQLE EFTNKVNQFE  60
QRSAFSSSIS PSNSDDGYTW RKYGQKHVKG SKFPRSYYKC TQQNCPVRKK VECAPNGQVI  120
EIVYNGAHNH PKTQPIRRQT MDESYVLGKV EETGQFEYNK DVTSCSSVLT EVSDPFSTNP  180
KSMNVFESAG TPELSSTLTS HDAEDENWTT QEGTFLDDAV NYELEPKRRK KESYSAEPSS  240
LSRTMREPKL VVQVESEIDI LEDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCIVRKHVER  300
ASDDLKSVIT TYEGKHNHEV PSANKTNGAA GHVRSTPTLN GQPCITSQKS LKDSNFRVQV  360
QDLPLPFERK QFVGSEYLRP SFVGSYLGYD LGFPPLHSSS LGYSSLQLPD FPLPLPPLPS  420
RMSLSAGPNE PPLGDFHFNN HTLLPNGASH SFLAVGNQQH INNSNNSRLI TAKEESQWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-3475322878Probable WRKY transcription factor 4
2lex_A7e-3475322878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231PKRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615387.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
RefseqXP_009615388.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
RefseqXP_009615389.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
TrEMBLA0A1U7XXG70.0A0A1U7XXG7_NICSY; probable WRKY transcription factor 26 isoform X1
STRINGXP_009615387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-75WRKY DNA-binding protein 34