PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf01192g03036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 214aa MW: 24807.7 Da PI: 10.3329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01192g03036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.5	2e-30	18	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sg 81 lp GfrFhPtdeel v+yL kk+ + +l++ + ++ d++++ P dLp + +++ yfFsk++ + +++k +r ++ sg Peinf101Scf01192g03036.1 18 LPIGFRFHPTDEELFVHYLSKKIFSMPLPALIIPEHHDVFHTFPCDLPGDL---REKRYFFSKTNGHINNSKGCSRLISgrdySG 99 699*************************6656666*******544...4578*******9999999965446779 PP NAM 82 yWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 yW+a g+ + +++ +g + g+kk++ fy+ ++ k+ +t+Wvmh+y+l Peinf101Scf01192g03036.1 100 YWNAIGQGQLIMVPfphqqQGLVLGMKKVFRFYQTNQIKSLRTRWVMHQYSL 151 **********99986655666*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-41	13	174	IPR003441	NAC domain
PROSITE profile	PS51005	37.439	18	174	IPR003441	NAC domain
Pfam	PF02365	1.1E-19	19	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEEKKEGAKT GTVGKLNLPI GFRFHPTDEE LFVHYLSKKI FSMPLPALII PEHHDVFHTF 60 PCDLPGDLRE KRYFFSKTNG HINNSKGCSR LISGRDYSGY WNAIGQGQLI MVPFPHQQQG 120 LVLGMKKVFR FYQTNQIKSL RTRWVMHQYS LVSTSQNVNM MQVGDWSIFR IYQRKLKSKN 180 VIRAKANALA EQCNKTNTCK RPLSAMLLQE NEFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-22	14	175	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF509868	0.0	AF509868.1 Petunia x hybrida nam-like protein 5 (NH5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767338.1	1e-103	PREDICTED: NAC domain-containing protein 68-like isoform X2
Refseq	XP_016459882.1	1e-103	PREDICTED: NAC domain-containing protein 41-like isoform X2
TrEMBL	Q8LRM0	1e-147	Q8LRM0_PETHY; Nam-like protein 5
STRING	XP_009767337.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13250	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	3e-36	NAC domain containing protein 41