PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01190g02028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 311aa    MW: 35176.4 Da    PI: 7.2949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01190g02028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12236261126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +ktelC+ +++tG+C+y ++C+FaHg
  Peinf101Scf01190g02028.1 236 FKTELCNKWQETGECPYKENCQFAHG 261
                               79***********************8 PP
2zf-CCCH19.71.5e-06274298125
                               --S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                               ykte Cr  +++ +C+yG rC+F H
  Peinf101Scf01190g02028.1 274 YKTEVCRMVLAGDICPYGHRCHFRH 298
                               9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-17230268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10232267IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887235263IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9236261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11269302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8269302IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99273301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQNENNQSTD DVINTTSTTN ATAAPPAIST SGKNKNPFLS SPTSTQHFDY FYSSNSPSLT  60
DSDDFAALAT TTTNHHQTGY ILEYQQLYNK YTLCLAHLQE SIKEVEALSH ENESLRLVNS  120
DLDHRLSLLT QATIQNCLLS DFNRLGLGQI SDPIRPPNLV PNRAPNLRPG IVTETNVRPE  180
RRNVERVTLP KSISVRSSGY LKLKGQGGKN QQRVYVPGGK KEEEALEFEV YNQGMFKTEL  240
CNKWQETGEC PYKENCQFAH GITELRPVIR HPRYKTEVCR MVLAGDICPY GHRCHFRHTL  300
TEEERRTGAL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20236302470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594882.11e-150PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_016495180.11e-150PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-67C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4C2051e-148A0A1S4C205_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009594882.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-66C3H family protein