PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01171g02004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 416aa    MW: 46057.2 Da    PI: 5.5339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01171g02004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.1e-14236279755
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               + Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  Peinf101Scf01171g02004.1 236 ITERKRRNRIKDGLFSLRALVPNiS------KMDKVAILGDAIDYINELQ 279
                               68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-13227283No hitNo description
PROSITE profilePS5088815.542229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17231296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-15235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11236279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17236297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MERALELLRP LVDSKNWDYC VVWKLGDDPS RIQGEVVTTN EPKWINHAEI SNSNFSHELK  60
GTLVLIPVAG GLVELYNSKL IYKDQKTIDF IINRFKLGSQ GANSSKGCFR AKKDDLALNS  120
FPLQYTDFAS STPLISQVSE SSPNPSCIEG SSTGSIPSNE ITLCHSSPSD HLSRNVPLSQ  180
PIDGYFEHTE LQCSGNLSKM EGAAFPLNQE NYIVSGDILS MGKKRQRGPY QSKNLITERK  240
RRNRIKDGLF SLRALVPNIS KMDKVAILGD AIDYINELQE NVKLYQTELN EMAAEVSNNG  300
SAEVVLSDMS EMSIVTAPKN VKAQLSNSTT KRTRMEGQVE VNQIGTREFL LKVSGSHKPG  360
EFTQLMEAIN YLELEVVNVS FTTSGGEILS ILIAEANMDR VLEAQKLKSS LIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227GKKRQRG
2222241KKRQRGPYQSKNLITERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887819e-41AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBankHG9755179e-41HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768126.10.0PREDICTED: transcription factor bHLH90 isoform X2
RefseqXP_009768127.10.0PREDICTED: transcription factor bHLH90 isoform X3
TrEMBLA0A1U7VJ710.0A0A1U7VJ71_NICSY; transcription factor bHLH90 isoform X3
TrEMBLA0A1U7VT590.0A0A1U7VT59_NICSY; transcription factor bHLH90 isoform X2
STRINGXP_009768125.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-33bHLH family protein