PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01168g03019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 301aa    MW: 34980 Da    PI: 6.2942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01168g03019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041161185123
                               EEETTTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                               + C+ C+k ++  ++++ H+++  H
  Peinf101Scf01168g03019.1 161 FYCELCNKQYKLAMEFEAHLSSydH 185
                               79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.8E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.78566111IPR000467G-patch domain
PfamPF015854.9E-1667107IPR000467G-patch domain
SuperFamilySSF576674.76E-5159192No hitNo description
PfamPF121718.4E-6161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDRWFNGQP DMHTRDKRQQ EMEEADRTSV LEDLAEDFRL PINHRPTENV DLENVEQASL  60
DTRLPSSNIG FRLLQKMGWK GKGLGKNEQG ITEPIKSGIR DPKLGIGKQE EDDYFTAEEN  120
IQRRKLDIEL EETEELAKKR EVLAEREQKI ETEVKEIRKT FYCELCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGS SRDDRQKREQ QRQEREMAKF AQMAANKKQQ EQQTPEESAN  240
IPAPSVVRTA TPLADQDQRK TLKFGFSAKG SSSKVKTLVN NSAKKQKATV ASVFSNDSDD  300
E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402222e-68AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence.
GenBankHG9754402e-68HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755132e-68HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230362.10.0G patch domain-containing protein 8
TrEMBLA0A3Q7EPG30.0A0A3Q7EPG3_SOLLC; Uncharacterized protein
STRINGXP_009757219.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86041415