PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01157g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 254aa    MW: 29331.9 Da    PI: 7.2629
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01157g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.6e-37251162102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d++ ++++sw e++++fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F
  Peinf101Scf01157g00001.1  25 FLTKTYQLVDDSSSDHIVSWGEDETTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPDR---------WEFANEHF 100
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               kkg+k+ll++i+r+k+
  Peinf101Scf01157g00001.1 101 KKGQKHLLCEIQRRKT 116
                               *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASNGGGDII FTVQDSQKAV LPAPFLTKTY QLVDDSSSDH IVSWGEDETT FVVWRPPEFA  60
KDLLPNYFKH NNFSSFVRQL NTYGFKKIVP DRWEFANEHF KKGQKHLLCE IQRRKTLPQL  120
HHLKPYHENI ITRSIYQPEA QNSSVDHDVL LTLTQDNQRL RKKNILLLSE LTHMKNLYND  180
IIYFIQNHVK QVDQRSINHQ QHQETIDEEP KGSSVKLFGV SLCGKKRLHH ENSGGTNYHE  240
CTGSADSSDM SSVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-22511610131Heat shock factor protein 1
5d5v_B9e-22511610131Heat shock factor protein 1
5d5v_D9e-22511610131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754502e-74HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755232e-74HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493336.11e-125PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6355e-78HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S4BWQ41e-124A0A1S4BWQ4_TOBAC; heat stress transcription factor B-4b-like
STRINGXP_009794990.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-80heat shock transcription factor B4