PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf01154g04007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 640aa MW: 72888.6 Da PI: 7.6629

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01154g04007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	307.2	3.9e-94	334	635	74	374
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156 ++++++++ ++ v+P+ ++s++ aN+ I + ++++++vHiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTg++ p++g +e Peinf101Scf01154g04007.1 334 VERQIHSVIVYITVCPFKRMSNIFANKSIAKLTSEATKVHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGIDFPQPGfrPAE 418 6778999999*******************************************************************9* PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 ++eetg+rL+++ ++++vpfe+++ +akr+++++l++L+++++E ++Vn+ ++l++++de+vs +++rd+vL+l+k+++P+ +v+ Peinf101Scf01154g04007.1 419 RVEETGRRLENYSKRFNVPFEYKA-IAKRWDAITLKDLNIEKDEIMVVNCLYRLKNIPDETVSDKNPRDAVLNLIKQINPHYFVH 502 ********************.7******************************************************* PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 +a +n++ F +rf eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e++++W+ r + +GFk Peinf101Scf01154g04007.1 503 GVVNAMYNASFFTTRFREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKQWQVRNQIVGFKR 587 ********************************************************************************* PP GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +pl+++++k++k+ +++ + + + v+e+s+++++gWk+r ++++S+W+ Peinf101Scf01154g04007.1 588 LPLNQDIVKEVKAKVKMAYHKDFLVDEDSNWMLQGWKGRIMYALSVWE 635 ***************888***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.152	254	615	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-91	334	635	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MNNTLFSLGD HNSCGGFEFG RHFLSASTTL SSNLGSGFSD EVVDGESRVV ESDYFDGVFK 60 YIHKMLMEED DLESRPCMFQ DCMALQAAEK SFYDALTQKN DFINDDCNAM TQFVESNFIT 120 SDLGGPQSFL EQQESLFCYP CDGALSDILL NPPLNNNNHK AAANGGDAVV PATNQGGNSS 180 SKRSSEGKKN HNRKDGDQYS SEGRNPKQFA STYVAEPEHT EGYDKALLCP AMSPSFYEES 240 SDSKNVAWNK QKSCHLKESK RGRPRGSKKG AKTTNEVVDL TCLLTRCAEA AASYNNKTFW 300 RFSRKLGNTR LPLATVMRDW RIALPMPSKL AFLVERQIHS VIVYITVCPF KRMSNIFANK 360 SIAKLTSEAT KVHIIDFGIL YGFQWPCLIH GISLRPGGPP KLRITGIDFP QPGFRPAERV 420 EETGRRLENY SKRFNVPFEY KAIAKRWDAI TLKDLNIEKD EIMVVNCLYR LKNIPDETVS 480 DKNPRDAVLN LIKQINPHYF VHGVVNAMYN ASFFTTRFRE ALFHFSSQFD MFEATMARED 540 EGRRMFEQEI FGRDIMNVIA CEGTERVERP ESYKQWQVRN QIVGFKRLPL NQDIVKEVKA 600 KVKMAYHKDF LVDEDSNWML QGWKGRIMYA LSVWEPVHRS

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MNNTLFSLGD HNSCGGFEFG RHFLSASTTL SSNLGSGFSD EVVDGESRVV ESDYFDGVFK  60
YIHKMLMEED DLESRPCMFQ DCMALQAAEK SFYDALTQKN DFINDDCNAM TQFVESNFIT  120
SDLGGPQSFL EQQESLFCYP CDGALSDILL NPPLNNNNHK AAANGGDAVV PATNQGGNSS  180
SKRSSEGKKN HNRKDGDQYS SEGRNPKQFA STYVAEPEHT EGYDKALLCP AMSPSFYEES  240
SDSKNVAWNK QKSCHLKESK RGRPRGSKKG AKTTNEVVDL TCLLTRCAEA AASYNNKTFW  300
RFSRKLGNTR LPLATVMRDW RIALPMPSKL AFLVERQIHS VIVYITVCPF KRMSNIFANK  360
SIAKLTSEAT KVHIIDFGIL YGFQWPCLIH GISLRPGGPP KLRITGIDFP QPGFRPAERV  420
EETGRRLENY SKRFNVPFEY KAIAKRWDAI TLKDLNIEKD EIMVVNCLYR LKNIPDETVS  480
DKNPRDAVLN LIKQINPHYF VHGVVNAMYN ASFFTTRFRE ALFHFSSQFD MFEATMARED  540
EGRRMFEQEI FGRDIMNVIA CEGTERVERP ESYKQWQVRN QIVGFKRLPL NQDIVKEVKA  600
KVKMAYHKDF LVDEDSNWML QGWKGRIMYA LSVWEPVHRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-38	347	634	86	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350886.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	M1CZT4	0.0	M1CZT4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400078286	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-138	GRAS family protein