PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01142g10056.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 181aa    MW: 20074.8 Da    PI: 9.0343
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01142g10056.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.1e-10629326
                              S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                              ++lC  f r G C+yGd+C++aH+
  Peinf101Scf01142g10056.1  6 QPLCIQFKRWGNCSYGDNCRYAHV 29
                              68*********************7 PP
2zf-CCCH31.62.9e-10123148227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+ C  + r+G CkyG+ C+FaHg+
  Peinf101Scf01142g10056.1 123 KTRFCIQWERSGSCKYGSYCHFAHGK 148
                               6777********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328431IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-8629IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6731IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-7828IPR000571Zinc finger, CCCH-type
SMARTSM003560.0174976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-64978IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-55075IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.235077IPR000571Zinc finger, CCCH-type
PfamPF146082.55474No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-13120154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-9120152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803121149IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8123148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038123148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNHSPQPLCI QFKRWGNCSY GDNCRYAHVT NTGPNWKGHG GFEEDQRNVC KMKPCYFYLN  60
GTGCPYGNKC IYLHEYDKKV EGGTTGICRE SSAISVGISG KHLRSMTSIE PKRCVDLSKK  120
FVKTRFCIQW ERSGSCKYGS YCHFAHGKAE LQSPGSSNPL KSLSSGGISA PAKRAEADKV  180
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620360.13e-62PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_016459038.13e-62PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBLA0A1S3Z3U56e-61A0A1S3Z3U5_TOBAC; zinc finger CCCH domain-containing protein 39-like isoform X1
STRINGXP_009620360.11e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-18C3H family protein