PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01142g10041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27005.5 Da PI: 6.2647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.9 | 1.4e-06 | 36 | 88 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L + l +++ + Ka+iL +A +++k++ Peinf101Scf01142g10041.1 36 KRIHKAEREKLKREHLNELFLSLADALELsE---QNQQtNGKASILGEAARFVKDM 88 688899***********************54...666669**********999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.26E-10 | 26 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.06E-6 | 33 | 93 | No hit | No description |
PROSITE profile | PS50888 | 11.503 | 35 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-4 | 36 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-6 | 36 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.007 | 41 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDSESPAPVF DKGATDVETS LDGSHHGKKN PRKVPKRIHK AEREKLKREH LNELFLSLAD 60 ALELSEQNQQ TNGKASILGE AARFVKDMLS QIKHLRTENT TLLSESQYLS VEKKELQDEK 120 SALEAEIFKL QSEVKAREAE TILDLNLAPP ESQLREFASQ NNFMTASEHA FQQSQIMNPV 180 YVLPLNSNPQ SYPAPDAAMA MPTSTVKKPR ARYPTPADVW PSQIFEKRPR LLGQEIQDSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ423077 | 1e-174 | DQ423077.2 Petunia axillaris subsp. parodii cultivar TA3310 DNA-binding protein (At3g47640) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364187.1 | 1e-134 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 1e-45 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | M0ZIT3 | 1e-132 | M0ZIT3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001617 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-48 | bHLH family protein |