PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01136g01006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 690aa    MW: 76369.9 Da    PI: 6.1357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01136g01006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-07181201526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C ffar G+C  G++C+F H+
  Peinf101Scf01136g01006.1 181 RCEFFAR-GWCIKGNSCRFLHV 201
                               6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.549176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6177200IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5181201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MVDILSILPL LISKGDTFVT SKLVWCINDL IANGSQLLEF LGLEQHLRSN LTTQQEPVAN  60
LALHTPVIEG GNDSCKISTS EETREEKDGK RTHIDADVQA SGFEDGETNT ERIQPYGQEL  120
DAEIFTDVPG KVGVQFTEGR DQEAMDNLKA TSPRLDVLKT RERSPSRGAD TRGGSKRSAI  180
RCEFFARGWC IKGNSCRFLH VKDHVTSQDK DGALDAAMIK GKLADGKGLE ENDKRSVLEG  240
SSDSVLSAVQ SGENLKLRSD EELHVCKDGP SSTPDVGRES LGCRPYFAGY STSSPLLKDG  300
SLHKNSVDGG KLGSVLFPDS YQNASGLDDV NYKRNLSVLD NQALRVLNDS SDRLLHHCSS  360
SRNIDALDDK KLLDSSQEYS SSRSTSLQQK SLAFPSSETE LSRFDLSRDR RRSSDHRTKV  420
SFDDWEPSVP FRPSFLLSQL IGCPKSLYDP IRDSIDQSDA GDGPSKFSFS GKGEPEFTKH  480
VRANADPVST GTLGPEQSSN KHSISGHIYQ RDILPDNLSE KNLSTNENEI DTADTAVAHQ  540
ENMDTFSKEE KYSRSVNLTK ADKLNSSTEL PRSRPREKTQ LEFERLRHGN EIDSDWKTDG  600
SGNKESRVMK HFHAALVEFI KELLKPTWSE GLMSKDAYKI IVKKTVGKVI NSLHPSQIPG  660
TAESIKQYLS ISQPKLSKLI EAYVEKHGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162405.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A1U7VSM90.0A0A1U7VSM9_NICSY; protein FRIGIDA-ESSENTIAL 1-like
STRINGXP_009767961.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-23C3H family protein