PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peinf101Scf01130g00031.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 173aa MW: 19197.8 Da PI: 6.3312

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01130g00031.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.4	1.4e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +Ca+Ck+lrr+CakdC+++pyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar++dPvyG+vg i+ lq+ Peinf101Scf01130g00031.1 8 PCASCKLLRRRCAKDCIFSPYFPSDDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARMKDPVYGCVGAISYLQN 92 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q++ql+ +lal+++e Peinf101Scf01130g00031.1 93 QVSQLQMQLALAQAE 107 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.729	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGNSNSPCA SCKLLRRRCA KDCIFSPYFP SDDPHKFAIV HKVFGASNIS KMLQELPVHQ 60 RADAVSSLVY EANARMKDPV YGCVGAISYL QNQVSQLQMQ LALAQAEILC IQMQSQDQSP 120 NLPIMSTPIH ELLSNDKSFL FSDNFSQDLD FASSSHRSSC NSEISQEGVF LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-40	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604707.1	9e-91	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_016435041.1	9e-91	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	8e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3X5C4	2e-89	A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRING	XP_009604706.1	3e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-67	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]