PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01118g04012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 237aa    MW: 26684.9 Da    PI: 8.2214
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01118g04012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR195.94.6e-3067154290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               +Yn+YA +vGF vr+++ +ks rnge ++r++vC+keg+++++ ++ ++++++r++tr gCka++ vkke++gkw+v+kl++eHn
  Peinf101Scf01118g04012.1  67 YYNAYAARVGFIVRVDAFRKSMRNGERVWRRLVCNKEGFSKRKGNQ-SDKKKRRSVTREGCKAMIIVKKEQSGKWVVAKLVKEHN 150
                               8*****************************************9999.99999********************************* PP

                      FAR1  87 Hela 90 
                               H+l+
  Peinf101Scf01118g04012.1 151 HPLV 154
                               **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2867154IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVESSSGKEG TSNDVDAEEG RLNMEMGMVE SSSGKELTSN DGEAEGRSNM EPYEGMEFES  60
EEAAKAYYNA YAARVGFIVR VDAFRKSMRN GERVWRRLVC NKEGFSKRKG NQSDKKKRRS  120
VTREGCKAMI IVKKEQSGKW VVAKLVKEHN HPLVAAPANT HRGAIFSQTP DEKDVKIQEL  180
TAELQKERKR SAALQEQLDF VLKDMEDHSE QLTRNINDIV HSVRELDSRK VVSSNGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114118KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802876.11e-126PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_009802877.11e-126PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_016509498.11e-126PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S4D8301e-125A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YFJ11e-125A0A1U7YFJ1_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A1U7YLL21e-125A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRINGXP_009802876.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127911520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-73FAR1 family protein