PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01093g11002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 507aa    MW: 58441.2 Da    PI: 9.2698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01093g11002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08163208555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Peinf101Scf01093g11002.1 163 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYIKFLQ 208
                               57888*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.18E-9156210No hitNo description
SuperFamilySSF474591.44E-11156216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11157212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.23158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF080791.4E-26273344IPR012988Ribosomal protein L30, N-terminal
TIGRFAMsTIGR013104.1E-99274507IPR005998Ribosomal protein L7, eukaryotic
CDDcd016575.72E-92348507No hitNo description
SuperFamilySSF551299.55E-59348507IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PfamPF003272.6E-21349399IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene3DG3DSA:3.30.1390.208.4E-36349404IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PROSITE patternPS006340367399IPR018038Ribosomal protein L30, conserved site
Gene3DG3DSA:3.30.1390.208.4E-36468507IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSMASLSYYS TSNFEANIHQ QELNSDMTML TPEQLLLDFN YDTFPNQETC YFDPFFDINE  60
YLLPLETNCN DSEIQDIDFQ SYPKRQKVFQ DNCQYPQDII TTPTTQGLFN GQFVPNNPPM  120
FQDFSSFSLP EIPLPPVFSS GWCNSAHEVP HVKKGNEKKM SAQSIAARQR RKKITEKTQE  180
LGKLIPGGHR MNTAEMLQAT FKYIKFLQAQ AGLLEFMGSY QENGESFQTA DLHKLVGSSL  240
IQEKLYSSDK CLVPKMFIEA LEKMGEEVKA VPVPESVLKK QKRSEEWALA KKQELEAAKK  300
KSSENRKLIY NRAKQYAKEY EQQEKELVQL KREARLKGGF YVDPEAKLLF IIRIRGINAM  360
PPQTKKILQL LRLRQIFNGV FLKVNKATVN MLHRVEPYVT YGYPNLKSIR ELIYKRGYGK  420
VDKQRIALTD NAVIEQVLGK HGIICMEDLV HEIMTVGPHF KEANNFLWPF QLKAPLGGLK  480
KKRNHYVEGG DAGNRENYIN ALIRRMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Le1e-1382645071244Ribosomal protein L7
4v7e_CF1e-138264507124460S ribosomal protein L30
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc08g075090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-25bHLH family protein