PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01077g02005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 407aa    MW: 46272.4 Da    PI: 7.7986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01077g02005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09129149526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+ f++ G C++Gd+C FaHg
  Peinf101Scf01077g02005.1 129 VCSEFRK-GNCSRGDNCEFAHG 149
                               7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.65E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6128151IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287159183IPR000571Zinc finger, CCCH-type
SMARTSM003562.4159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEGLCAEQHH LKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSVDPVSD MFMDSPKSDS  60
DTLFQKFLPY NSLDEDDDPY SADHFRMYEF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RRYHYSGTVC SEFRKGNCSR GDNCEFAHGV FECWLHPTRY RTEACKDGKN CKRKVCFFAH  180
TPRQLRVLPP SCHEPGSNSP RNSPVEKKYR NMNQCCVFCH SVSASPTSTL MGMSHMSPPM  240
SPSLSPPLSP ANKSQFSPMS RYSDRFGSVE SSCGMGQLDP TVMSYKDAFN ELVSSLEAMN  300
VNHETNSSSA GIANNFDGKL PWLDVNFNNN NNNYYDDQQQ FLMSPSAPSP SPVSSSRTKY  360
YTRDFPASSN MMSFGEENNN NNATTSKYYN DNGLGGPDFG WVNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789499.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
RefseqXP_016489908.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9ZWA13e-88C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1S4BLZ50.0A0A1S4BLZ5_TOBAC; zinc finger CCCH domain-containing protein 61-like
TrEMBLA0A1U7XRH60.0A0A1U7XRH6_NICSY; zinc finger CCCH domain-containing protein 61-like
STRINGXP_009789499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-82C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]