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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf01061g04014.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
C3H |
Protein Properties |
Length: 402aa MW: 43859.4 Da PI: 8.0476 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf01061g04014.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.5 | 1.9e-12 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C++++rtGtCk+G++CkF+H++
Peinf101Scf01061g04014.1 52 EPTCQYYLRTGTCKFGASCKFHHPR 76
689********************96 PP
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2 | zf-CCCH | 37.5 | 4e-12 | 96 | 120 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
t++C+++++tG+Ck+G +CkF+H+
Peinf101Scf01061g04014.1 96 ETRECSYYSKTGQCKFGLTCKFHHP 120
79**********************9 PP
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3 | zf-CCCH | 35.1 | 2.3e-11 | 252 | 277 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C+++ +tG Ck+G++C+++H+p
Peinf101Scf01061g04014.1 252 DQPVCQYYTKTGDCKFGSSCRYHHPP 277
6899********************97 PP
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4 | zf-CCCH | 34.4 | 3.8e-11 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++e+C+f+++ G+Ck+G +CkF H++
Peinf101Scf01061g04014.1 297 PGMEPCSFYMQRGFCKFGHTCKFDHPM 323
689**********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.962 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 51 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-10 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 93 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 97 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-6 | 250 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.511 | 250 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 252 | 277 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 252 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 255 | 276 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.474 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 297 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 300 | 322 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MAGNESHSVG PETGLEESMM RLGLWDKQVY PERSGVGGLQ LGGIAYPERI GEPTCQYYLR 60 TGTCKFGASC KFHHPRNGGS LSNIQLNIYG YPLRPETREC SYYSKTGQCK FGLTCKFHHP 120 YPAGLSTPAP ARPFYPTVQS LPAPPEEFNS ASTSFRVEKP PHLPGSYVPG AYGPFLLHPG 180 VVTIQNWSTY SGPVSSAVSP GAQPAAGVTS IYGISQLASS TAAFAAPYSP LHSATGPSSS 240 THKEKSFPER PDQPVCQYYT KTGDCKFGSS CRYHHPPDWI ASQTNCTFSS LGLPLRPGME 300 PCSFYMQRGF CKFGHTCKFD HPMGTLQNSP SAASLPDTPT ASYMLGSSFT LAPTSLPEIE 360 GRLLLFYEST FLTEQLKYYS NAFRVWAFTI CSCQVKEVNQ QS
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