PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00985g06014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 278aa    MW: 31222.7 Da    PI: 5.0548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00985g06014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-32114170258
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                               dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+vers++dp++++itYeg H h
  Peinf101Scf00985g06014.1 114 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCGAKKQVERSSDDPDTFIITYEGLHLH 170
                               8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30102170IPR003657WRKY domain
PROSITE profilePS5081128.208108173IPR003657WRKY domain
SuperFamilySSF1182901.31E-27109170IPR003657WRKY domain
SMARTSM007741.3E-36113172IPR003657WRKY domain
PfamPF031062.7E-26114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLMSEEEFKT SWSYEEELIK ELLDNESPIF LAPQDSTSTS CHNSLVTMSF ISAVPSGANI  60
DDIESGLSMT SYGIQPHDER RLGLERGLNL MMSKQEDHDA KYTLRIKTGN AIADDGYKWR  120
KYGQKSIKNS PYPRSYYKCT NPRCGAKKQV ERSSDDPDTF IITYEGLHLH FAYPFITLDP  180
PQFVDQPNKK PKLTNSKAQN YKSENASEVD ESPKCDNTSL VGDFEQELGF GKMGSHGLLE  240
DMVPLLVRNP SMKPTSSYSS SSSYSSPPTS PSFSWSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-221121701674Probable WRKY transcription factor 4
2lex_A5e-221121701674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-69HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-69HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764599.11e-143PREDICTED: probable WRKY transcription factor 49
RefseqXP_016450821.11e-143PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1S3YF121e-141A0A1S3YF12_TOBAC; probable WRKY transcription factor 49
TrEMBLA0A1U7VQG91e-141A0A1U7VQG9_NICSY; probable WRKY transcription factor 49
STRINGXP_009764599.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-42WRKY DNA-binding protein 49