PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 395aa MW: 44659.6 Da PI: 9.8676

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00979g02022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	8.6e-32	207	260	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Peinf101Scf00979g02022.1 207 PRMRWTSSLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 260 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-15	203	260	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-28	205	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	207	260	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-7	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSAWKRTNS TTDNEMNLLF WRRALESKNS ISKVPDNSTS 60 LFELSLSNPK PSPEPNSVHF HHLQNNHMNI IHSLYQNHLT NHYHQQQNQG LNSELSFLKP 120 IRGIPVYHQN PPTPTSPFPF TQQTFDNTTT AATLPLRSSA SYINSNNKTI SSTTMPFQSQ 180 QHHNHQAGIM RSRFLSRFPT KRTIRAPRMR WTSSLHARFI HAVELLGGHE RATPKSVLEL 240 MDVKDLTLAH VKSHLQMYRT VKTTDRAAGP ASSGQSEVFD NGSSGDNTSE DLMPDTENSR 300 KTELSNQQDR QRIHLPGKDY NGLWRNSSSR ESWQLHDKPG DYPGNIPSLE KKQHKDMEAN 360 CSSYDRVSAE VSSSSITKTS PKNPNLEFTL GRSSE

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSAWKRTNS TTDNEMNLLF WRRALESKNS ISKVPDNSTS  60
LFELSLSNPK PSPEPNSVHF HHLQNNHMNI IHSLYQNHLT NHYHQQQNQG LNSELSFLKP  120
IRGIPVYHQN PPTPTSPFPF TQQTFDNTTT AATLPLRSSA SYINSNNKTI SSTTMPFQSQ  180
QHHNHQAGIM RSRFLSRFPT KRTIRAPRMR WTSSLHARFI HAVELLGGHE RATPKSVLEL  240
MDVKDLTLAH VKSHLQMYRT VKTTDRAAGP ASSGQSEVFD NGSSGDNTSE DLMPDTENSR  300
KTELSNQQDR QRIHLPGKDY NGLWRNSSSR ESWQLHDKPG DYPGNIPSLE KKQHKDMEAN  360
CSSYDRVSAE VSSSSITKTS PKNPNLEFTL GRSSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615774.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X3
Refseq	XP_016459616.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	5e-90	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S3Z5E6	0.0	A0A1S3Z5E6_TOBAC; probable transcription factor KAN2 isoform X3
STRING	XP_009615772.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-93	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]