PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00974g08001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Dof

Protein Properties

Length: 524aa MW: 57585.8 Da PI: 4.5519

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00974g08001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Peinf101Scf00974g08001.1 102 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 161 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	95	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSELKDPAIK LFGKTIVATE EETNRDVQEH VESHQDDSGG DEDDDKDEME PTTGNELQDE 60 NSDLKESDII KEPPVDNDCS ATKSEDEQGE PSNPQDKILK KPDKILPCPR CNSMETKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN SVPHYRQISV SEALPNALID 180 YPNGIQQPVL VFGSHAPLCE SMASVLNIGD KAMQNCSPNG SQKPEESGVQ VTYEAGDNGD 240 DHSRVTAASS KDKVDKTVPD MLGQNYRSFP SLPCYPGAPW PYPWSSAVPP PGYCPPLFPM 300 PFYPAAAYWG CGVAGSWNVP WVSPPTVSLT QTPSTSGPNS PTLGKHSREE NILKPLSSEE 360 EPQKESNPEK CLWVPKTLRI DDPGEAAKSS IWATLGIKHD GVDSVGGSLF SAFRSKNDEK 420 TSVSENSTVL QANPAAFSRD FNSFSRRCDL CSFEEPGLSF LTRDEGIKEL IQPVAIVYEN 480 VGGSAVKEKS KAMYQADYED PGPNFNYHSG FLTSPPSPLP EDMN

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSELKDPAIK LFGKTIVATE EETNRDVQEH VESHQDDSGG DEDDDKDEME PTTGNELQDE  60
NSDLKESDII KEPPVDNDCS ATKSEDEQGE PSNPQDKILK KPDKILPCPR CNSMETKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN SVPHYRQISV SEALPNALID  180
YPNGIQQPVL VFGSHAPLCE SMASVLNIGD KAMQNCSPNG SQKPEESGVQ VTYEAGDNGD  240
DHSRVTAASS KDKVDKTVPD MLGQNYRSFP SLPCYPGAPW PYPWSSAVPP PGYCPPLFPM  300
PFYPAAAYWG CGVAGSWNVP WVSPPTVSLT QTPSTSGPNS PTLGKHSREE NILKPLSSEE  360
EPQKESNPEK CLWVPKTLRI DDPGEAAKSS IWATLGIKHD GVDSVGGSLF SAFRSKNDEK  420
TSVSENSTVL QANPAAFSRD FNSFSRRCDL CSFEEPGLSF LTRDEGIKEL IQPVAIVYEN  480
VGGSAVKEKS KAMYQADYED PGPNFNYHSG FLTSPPSPLP EDMN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507590.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S4D2D1	0.0	A0A1S4D2D1_TOBAC; cyclic dof factor 3-like
STRING	XP_009598842.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-102	cycling DOF factor 2