PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00962g10037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 595aa    MW: 66630 Da    PI: 5.9331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00962g10037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12407451655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + ErrRR++iN++f  L ++lP       +K++K++ L +++eY+k+L+
  Peinf101Scf00962g10037.1 407 VISERRRREKINERFMLLASMLPAG-----GKVDKISLLDETIEYLKELE 451
                               578********************98.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-3115167IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.618401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-15404469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-12404455No hitNo description
Gene3DG3DSA:4.10.280.102.1E-15406462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10408451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MAMGCKDHNG VPDNLRKQLA FAVRSIQWSY AIFWSTTTRK TVQAGEVDED QLGLQRTEQL  60
RELYSSLLIG EGEEDLQPQA KRPSAALSPE DLTDTEWYFL VCMSFVFNVG QGLPGKSLAR  120
NETTWLCNAH QAESRTVVCF PYLGGVIELG VTELVVEDPN LIQQIKTSIL KVDHSIIPKR  180
PNYVSNDAKN DANGVCPKLD HNVFESDACP VEMNNSSPHD SSNGFVANQE VEDSLMVVGV  240
IGETSQAQSW KFTDDNMSNG VHNSLNSSDC ISQTYANCEK LSPLSSGEKE TKNAPLDHQE  300
HNQKKLHFLD HQGDETQYQS VLSTLLKSSD QLTLGPYFRN TNKRSCFSGW KNDAHIPSRG  360
TAQKLLKKVL VEVPRMHGGA IHKFSRENRK RNGLWRPEVD DTDRSRVISE RRRREKINER  420
FMLLASMLPA GGKVDKISLL DETIEYLKEL ERRVQDLEAK SGRRPNDIAE QTSDNCGTSK  480
FNDIEESLPN KRKACEMDEL EPESRNGLMK GSSADSIVIN MIDKEVSIKM RCLSSEGLLF  540
KIMEALTGLQ MDCHTVQSSN VDGILSISIE SKSNVSKTVS VGTIREALQR VVWKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409414ERRRRE
2410415RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0205450.0AF020545.1 Petunia x hybrida bHLH transcription factor JAF13 (jaf13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313104.10.0transcription factor EGL1-like
TrEMBLO649080.0O64908_PETHY; BHLH transcription factor JAF13
STRINGXP_009779730.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-142bHLH family protein