PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00959g07009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26041.6 Da PI: 9.9312 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2.1e-08 | 68 | 99 | 4 | 35 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskaps 35 +h ++Er+RR+riN +++L++l P ++k+ Peinf101Scf00959g07009.1 68 THAMAERKRRERINAHLHTLKKLFPYLPKELR 99 79***********************9753333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.94E-8 | 56 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.57E-5 | 67 | 99 | No hit | No description |
Pfam | PF00010 | 7.7E-6 | 68 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-6 | 68 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.2E-6 | 154 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MISSLQGCNG FLQRANSLQL LHHKKNGGGN GYKYYSSSNT MANNTTTTAA DENAKSTRKS 60 KSKDTAWTHA MAERKRRERI NAHLHTLKKL FPYLPKELRK KVAQQLETKR DDKGGCCSNN 120 EFSSLFLPSE TDEVAVSYCE GSSDTEGQLM VKATVCCEDR PGLNGHLSMA VSSVQGRVIK 180 AEMATVGGRT KAELVVVLCK ENGGERDIAQ LRRALRAVVE NRALGLGSSV VLGRRFGC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 77 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591424.1 | 1e-98 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S4CBR7 | 5e-96 | A0A1S4CBR7_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009591424.1 | 5e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 4e-22 | bHLH family protein |