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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00931g03025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 35288.3 Da PI: 8.7206 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.2e-06 | 89 | 112 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Peinf101Scf00931g03025.1 89 KSILCEFFKA-GQCAKGFKCKFSHD 112 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.79E-6 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.671 | 159 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8 | 159 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 5.5E-17 | 217 | 295 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MPPKQSKADI AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQNVVPKTDP KKLDAKKKKE 60 EEKERERELN ELFKVAISQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE 120 KIDIFSDKRD EGKETMEDWD QETLEKVVAS KSEEYNKNKP TDIVCKHFLE AVEKKQYGWF 180 WSCPNGGKEC MYRHALPPGY ILKSQMKALL QEESEKMPIE EEIDEQRAKL TASTPLTTEL 240 FMEWKKKKME EREANLAKQR ADRAKNDRMS GRELFMSDAS WFVDDVGAYD KYDREEESEE 300 PPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240057 | 2e-56 | AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence. | |||
GenBank | EU180574 | 2e-56 | EU180574.1 Solanum lycopersicum clone BAC C09HBa0179M08, complete sequence. | |||
GenBank | HG975448 | 2e-56 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 2e-56 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602548.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X2 | ||||
Refseq | XP_009788678.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1 | ||||
Refseq | XP_009788679.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2 | ||||
Refseq | XP_016463306.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1 | ||||
Refseq | XP_016463307.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2 | ||||
Swissprot | Q0JHZ2 | 1e-166 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A1S3ZG85 | 0.0 | A0A1S3ZG85_TOBAC; zinc finger CCCH domain-containing protein 11-like isoform X1 | ||||
TrEMBL | A0A1S3ZGA1 | 0.0 | A0A1S3ZGA1_TOBAC; zinc finger CCCH domain-containing protein 11-like isoform X2 | ||||
TrEMBL | A0A1U7XCS9 | 0.0 | A0A1U7XCS9_NICSY; zinc finger CCCH domain-containing protein 11-like isoform X1 | ||||
TrEMBL | A0A1U7XP03 | 0.0 | A0A1U7XP03_NICSY; zinc finger CCCH domain-containing protein 11-like isoform X2 | ||||
STRING | XP_009788678.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5680 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-135 | C3H family protein |
Publications ? help Back to Top | |||
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