PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00930g04004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 413aa    MW: 43467.5 Da    PI: 8.2618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00930g04004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-053052123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C+k F r  nL+ H r H
  Peinf101Scf00930g04004.1 30 FVCEICNKGFQRDQNLQLHRRGH 52
                              89*******************88 PP
2zf-C2H217.51.1e-05106128123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+Lk H++ +
  Peinf101Scf00930g04004.1 106 WKCDKCSKNYAVQSDLKAHLKIC 128
                               58******************987 PP
3zf-C2H211.10.0012136154523
                               TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                               dCg++Fsr++++ +H   +
  Peinf101Scf00930g04004.1 136 DCGTMFSRRDSFITHRAFC 154
                               8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-82952No hitNo description
PROSITE profilePS5015710.9493052IPR007087Zinc finger, C2H2
PfamPF121716.3E-53052IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0173052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035519071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-594127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-8101126No hitNo description
PROSITE profilePS501578.912106134IPR007087Zinc finger, C2H2
SMARTSM0035565106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MNDSIGSGEV SVSSSVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RTSNEVKKRV YVCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKNYAVQSD  120
LKAHLKICGT KEYKCDCGTM FSRRDSFITH RAFCDVLTKD SEKAKIAVIT PNADEDPKVL  180
AVASSSPLPP PTPPAPPPAS EPESPVVLSP AAPEPLPPAV PSSTAVMSSD SPIQSSEPPS  240
SMEPISLCLA MNHGSSMFQP AGQERRQYAP APQPAMSATA LLQKAAQMGA TATNSSLLRG  300
LGLFSSSSSS HGQHEWSGRQ VDTDGASLAV GLGLGLPCDD GSGLKELMLG TPSVFGPKHP  360
TLDLLGLGMA AGGGPTPGLS ALITSMGSNL DVPAAAGSFG SGEISGKELG RNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30102172371Zinc finger protein JACKDAW
5b3h_F3e-30102172371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-161HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.20.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9SCQ61e-139IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2R6S2F50.0A0A2R6S2F5_ACTCH; Protein indeterminate-domain like
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-96indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]