PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00918g01001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 507aa    MW: 57260.7 Da    PI: 4.5125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00918g01001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.12.8e-821224932373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlar.svselykalppsetseknsseelaa 80 
                               ++lLl  Aea+++g+  la+ ++ rl+++ s+d++     p+ Rla yft++L  ++++ ++ el ++   +  ++++ss++++a
  Peinf101Scf00918g01001.1 122 TDLLLMGAEAIEAGNYDLASIVVLRLNTILSNDQEngdnnPLDRLALYFTQGLLCKILNdNSRELLNQ--NQLYRSDSSSTSMTA 204
                               5789999*********************966665435566*****************99344444433..3333444599999** PP

                      GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                               +++++e+sP++kf+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+  La+R +   slRiT+v+  ++++++ +++tg+rL
  Peinf101Scf00918g01001.1 205 FQMLQEISPYVKFAHFTANQAILEATQGSQQVHILDFDIMEGIQWPPLMVDLAERGDLNCSLRITAVVG-DKNNSNYIQKTGKRL 288
                               *******************************************************************99.667999********* PP

                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe... 245
                               ++fA++++++f f+ ++ ++ edl  e+++v    + +l+ ++v++  +++ ++++l +   ++ + +++lsPk+vv+ve+e   
  Peinf101Scf00918g01001.1 289 QEFADSINLSFMFDQVLLTKEEDL--ENIQVVGgdHSNLIASCVIHQLHMP-QRGTLVK---TFFNGLRRLSPKMVVLVEEElyn 367
                               ***************877766666..6666666447788999999888888.7777777...8*******************755 PP

                      GRAS 246 .adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpv 327
                                ++  s sF+e f+eal++y+++ +s+  +l+     + +++E+e+lg +i + + +   e+ er++    W+e l +  GF+++
  Peinf101Scf00918g01001.1 368 lTKIPSMSFVEFFCEALHHYTTISESILGGLGGGYkLALRVIEKEFLGARILDSLRQFPCEKSERER----WSEGLYSlKGFRKI 448
                               4445788********************88887776488999***************99999777765....***997658***** PP

                      GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               p+s+++++qak+l++ ++  gy v++e+  l l+Wk+rpL+++S W
  Peinf101Scf00918g01001.1 449 PMSSSNVTQAKHLVSLFS-GGYWVQNEHSKLALCWKSRPLTTASIW 493
                               ******************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.98795475IPR005202Transcription factor GRAS
PfamPF035149.8E-80122493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MINPYLEYSN FETTTFPWQS PSINNPHCSI QDFVNNVVIN DDVDIEDYFQ TNDTVDMVDF  60
DFIDGDADLF PVQNSQQLSL FSRQQVEVEN TNLSIQSQIL SVDNGPHLKL LQDQLMEETS  120
ITDLLLMGAE AIEAGNYDLA SIVVLRLNTI LSNDQENGDN NPLDRLALYF TQGLLCKILN  180
DNSRELLNQN QLYRSDSSST SMTAFQMLQE ISPYVKFAHF TANQAILEAT QGSQQVHILD  240
FDIMEGIQWP PLMVDLAERG DLNCSLRITA VVGDKNNSNY IQKTGKRLQE FADSINLSFM  300
FDQVLLTKEE DLENIQVVGG DHSNLIASCV IHQLHMPQRG TLVKTFFNGL RRLSPKMVVL  360
VEEELYNLTK IPSMSFVEFF CEALHHYTTI SESILGGLGG GYKLALRVIE KEFLGARILD  420
SLRQFPCEKS ERERWSEGLY SLKGFRKIPM SSSNVTQAKH LVSLFSGGYW VQNEHSKLAL  480
CWKSRPLTTA SIWVPKSSPS PSSSVSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4112949727382Protein SCARECROW
5b3h_A1e-4112949726381Protein SCARECROW
5b3h_D1e-4112949726381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606529.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3YVQ60.0A0A1S3YVQ6_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009606529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-47GRAS family protein