PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00901g02009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15853.7 Da PI: 5.2519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.9e-08 | 14 | 42 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g WT+eEd +l +v+++G +W+ ++ Peinf101Scf00901g02009.1 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPN 42 799*****************889987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 6 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.853 | 9 | 47 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.1E-8 | 9 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00236 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MARTRCYDKS GLKKGTWTPE EDRKLTAYVT RYGCWNWRQL PNRKKRRENG TQISANSNIP 60 QLSPKQSCSE LSSCASVDQH VENMHAEREV FQEEYLFEES SLISFWTEPF LVDNFSTTSD 120 FFVPSLIDDG LVSPFSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246969.1 | 3e-32 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1J6I9L9 | 8e-31 | A0A1J6I9L9_NICAT; Myb-related protein myb4 | ||||
STRING | XP_009779987.1 | 2e-31 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-12 | myb domain protein 16 |