PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00889g11042.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 384aa    MW: 43957.9 Da    PI: 6.4595
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00889g11042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.42e-2377159286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                               W ++e+++Li  rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k +++   ++s+ +++y +++e
  Peinf101Scf00889g11042.1  77 WVQEETRTLISQRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKCNQEL--NGSVVKMSYHKEIE 159
                               ***************************************************************999988..46677899988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-466139IPR009057Homeodomain-like
PROSITE profilePS500908.29369133IPR017877Myb-like domain
SMARTSM007171.6E-473135IPR001005SANT/Myb domain
CDDcd122031.09E-2675140No hitNo description
PfamPF138372.1E-1776160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSEKPQNSIN LLYNDQENSN TNMIIQVSTP PSNTHHPQQP HHPQNHPPHL LNSDTTSSGG  60
EDNINNVKGP KKRAETWVQE ETRTLISQRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK CNQELNGSVV KMSYHKEIEE LLRDRNKNGG GFKNSGLKVD  180
AFMQFSDKGL DDTDITFGPV EENGRPTLNL ERQLDHDGHP LAITAADAVT ASGVSPWNWR  240
ETPGNGEQSN STEGRVISVK WGDYTKRIGI DGSADAIKEA IKSTFRLRTN RAFWLEDEDN  300
IVRTIDRDMP LRSYTLHVDE GLTIKVCMFE EADHLPVHTE DKTFYTAADF RDFLSHRGWT  360
CLREYNGYRH VDIMDELCPG AVYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3971157186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS469420.0S46942.1 Box II Factor [tobacco, mRNA Partial, 1506 nt].
GenBankTOBB2F0.0M96432.1 Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end.
GenBankTOBGT1A0.0M93436.2 Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434047.10.0PREDICTED: trihelix transcription factor GT-4-like
SwissprotQ9LU921e-158TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A1S3X2C20.0A0A1S3X2C2_TOBAC; trihelix transcription factor GT-4-like
STRINGXP_009599397.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.11e-161Trihelix family protein