PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Trihelix

Protein Properties

Length: 384aa MW: 43957.9 Da PI: 6.4595

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00889g11042.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.4	2e-23	77	159	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k +++ ++s+ +++y +++e Peinf101Scf00889g11042.1 77 WVQEETRTLISQRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKCNQEL--NGSVVKMSYHKEIE 159 ***************************************************************999988..46677899988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-4	66	139	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.293	69	133	IPR017877	Myb-like domain
SMART	SM00717	1.6E-4	73	135	IPR001005	SANT/Myb domain
CDD	cd12203	1.09E-26	75	140	No hit	No description
Pfam	PF13837	2.1E-17	76	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSEKPQNSIN LLYNDQENSN TNMIIQVSTP PSNTHHPQQP HHPQNHPPHL LNSDTTSSGG 60 EDNINNVKGP KKRAETWVQE ETRTLISQRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAK CNQELNGSVV KMSYHKEIEE LLRDRNKNGG GFKNSGLKVD 180 AFMQFSDKGL DDTDITFGPV EENGRPTLNL ERQLDHDGHP LAITAADAVT ASGVSPWNWR 240 ETPGNGEQSN STEGRVISVK WGDYTKRIGI DGSADAIKEA IKSTFRLRTN RAFWLEDEDN 300 IVRTIDRDMP LRSYTLHVDE GLTIKVCMFE EADHLPVHTE DKTFYTAADF RDFLSHRGWT 360 CLREYNGYRH VDIMDELCPG AVYR

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSEKPQNSIN LLYNDQENSN TNMIIQVSTP PSNTHHPQQP HHPQNHPPHL LNSDTTSSGG  60
EDNINNVKGP KKRAETWVQE ETRTLISQRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK CNQELNGSVV KMSYHKEIEE LLRDRNKNGG GFKNSGLKVD  180
AFMQFSDKGL DDTDITFGPV EENGRPTLNL ERQLDHDGHP LAITAADAVT ASGVSPWNWR  240
ETPGNGEQSN STEGRVISVK WGDYTKRIGI DGSADAIKEA IKSTFRLRTN RAFWLEDEDN  300
IVRTIDRDMP LRSYTLHVDE GLTIKVCMFE EADHLPVHTE DKTFYTAADF RDFLSHRGWT  360
CLREYNGYRH VDIMDELCPG AVYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-39	71	157	1	86	DNA binding protein GT-1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S46942	0.0	S46942.1 Box II Factor [tobacco, mRNA Partial, 1506 nt].
GenBank	TOBB2F	0.0	M96432.1 Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end.
GenBank	TOBGT1A	0.0	M93436.2 Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434047.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9LU92	1e-158	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	A0A1S3X2C2	0.0	A0A1S3X2C2_TOBAC; trihelix transcription factor GT-4-like
STRING	XP_009599397.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-161	Trihelix family protein