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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00889g05023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 466aa MW: 50838.8 Da PI: 8.4833 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 1e-40 | 175 | 252 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akey+r+hkvC+ h+k+p+v+v+g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Peinf101Scf00889g05023.1 175 RCQVEGCNLDLSSAKEYYRKHKVCDSHAKCPKVIVAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 252 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-31 | 169 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.855 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-37 | 174 | 255 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-31 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MEWNVKWDWG NLVMFDSNVS KSPKELQLTD WGVEEEGELD AGSFNLSSGG SGTGGYGSDV 60 GRGSSIKSSM SASTDSSPRE SLKASNFAFE AFDGSPEDLS KKMGPCRAEL FRNSPAMEAS 120 VGSVEPLIGL KLGKRTCEAI MGGSSSKVSS FPQNPISSAA TKKTKSSCQN AAMSRCQVEG 180 CNLDLSSAKE YYRKHKVCDS HAKCPKVIVA GVARRFCQQC SRFHSLSEFD EKKRSCRRRL 240 SDHNARRRKP QQENIQFNSG RVSPLFYDSR QPMSLLLNSA QLIHSKAAAS SSWESTQDTK 300 FSITREFTLK PERDGSTNGQ SLLAGNQLSR VVGAHSNTPN LLLPSKGTAA EVFNRGAKES 360 MFNMGTGPEF PRALSLLSTN SWGSSEPDSV SLNRPTHASH ISMAEPIMHA IPQGIPHLSC 420 EYWQAGQNSS YPRNHTLAAN THTGGFQEIE LFKAPFDSDF YLNALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 176 | 249 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 248 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352180.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006352181.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006352182.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015166302.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2K9ZXI3 | 0.0 | A0A2K9ZXI3_PETHY; Squamosa promoter binding-like protein 2 | ||||
STRING | PGSC0003DMT400084734 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 5e-57 | squamosa promoter binding protein-like 2 |