PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00883g05009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 374aa MW: 41858.4 Da PI: 8.6267 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 140 | 217 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ l +ak+yhrrhkvCe+h+kap+v++ gleqrfCqqCsrfh++sefDe+krsCrrrLa+hnerrrk+++ Peinf101Scf00883g05009.1 140 RCQVEGCQIVLVNAKTYHRRHKVCEMHAKAPKVVLLGLEQRFCQQCSRFHSVSEFDESKRSCRRRLAGHNERRRKSSQ 217 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 32.214 | 138 | 215 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-33 | 138 | 202 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 139 | 220 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-32 | 141 | 214 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MENGGWNFFS NNNIESCSSN INGGSTTTVG GQISNSTHHA WDFWQLGSSS TNTSLSHDLE 60 WNTNNISLSH DPTNRQPQTF NGYNPNLNLN LGSKKHYIEN YEGGGEVVGF AMSKRGKPYF 120 CGGSGGDGGA AMPAALVVPR CQVEGCQIVL VNAKTYHRRH KVCEMHAKAP KVVLLGLEQR 180 FCQQCSRFHS VSEFDESKRS CRRRLAGHNE RRRKSSQEHF ANTRNNFQGK FRDLPVNEGR 240 ALSLLSSYSD SLIPKCNLPA RSYSSSIDEL IAGSRATSLA RQLLLEKDWH RHQHRQNLSN 300 QPKNTSFTHD CNHIALESHG WGRINDVAEH LTLNLMHVRN SEFGFLPGQK QPKEEGKEEW 360 CPGHWNSFAG GHVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-32 | 123 | 214 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625591.1 | 1e-146 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X2 | ||||
TrEMBL | A0A2K9ZXI7 | 0.0 | A0A2K9ZXI7_PETHY; Squamosa promoter binding-like protein 9c | ||||
STRING | XP_009625590.1 | 1e-144 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13408 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-35 | squamosa promoter binding protein-like 3 |