PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00851g02013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 273aa MW: 31379.8 Da PI: 4.5062

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00851g02013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	56	108	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rq+ +WFqNrRa++k Peinf101Scf00851g02013.1 56 KRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQIAIWFQNRRARWK 108 4567889*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.63E-19	51	112	IPR009057	Homeodomain-like
SMART	SM00389	6.0E-19	53	114	IPR001356	Homeobox domain
CDD	cd00086	4.31E-17	55	111	No hit	No description
PROSITE profile	PS50071	16.455	55	110	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-16	56	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	61	108	IPR009057	Homeodomain-like
PRINTS	PR00031	1.9E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-5	90	106	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-11	110	143	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MMKRFSFSDS SGKLLYPPEE KSMKENLAYN SEFQAMLDGL EDEDGIEESG CITGKKRRLR 60 VDQVQALEKI FEVDNKLDPE RKVKIAQELG LQPRQIAIWF QNRRARWKTK QLERDYNILK 120 ANYDALQLNY TKVEQEKEGL LTEENSSPFQ RPQEILELNT RNYEVSNKLN SDFVDSKDGS 180 SDSDSSGVMN EENYNNSLNY QPLMPKVPSY STALDHLSLS STTYTQLLDP RASSTSMSAN 240 YQQQVIGRME EQNALTTEDS CNIYSVDQAP NLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460142.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_018631361.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1S3Z7G3	1e-161	A0A1S3Z7G3_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRING	PGSC0003DMT400079230	1e-133	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-41	homeobox protein 16