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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00835g06019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 403aa MW: 42981.5 Da PI: 9.3347 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.4 | 3.2e-41 | 71 | 142 | 5 | 76 |
TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 gCeadls++k y++rhkvC +hsk+pvv+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Peinf101Scf00835g06019.1 71 SGCEADLSDVKAYYSRHKVCATHSKSPVVIVAGIEQRFCQQCSRFHRLPEFDDGKRSCRRRLAGHNERRRKP 142 58********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 29.53 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-30 | 71 | 129 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.1E-31 | 71 | 141 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-37 | 71 | 146 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MNGLSNSEME SASSISGNSS SSPDSPPTGL KFGQKIYFEH VGLGVHNKSP SGSSSPVTGA 60 PAPASKKGRG SGCEADLSDV KAYYSRHKVC ATHSKSPVVI VAGIEQRFCQ QCSRFHRLPE 120 FDDGKRSCRR RLAGHNERRR KPPPGSLLST RYGSLSSSIF GGTPLHFPLL ALRLHNSLSI 180 SLALLLHADR GYINTALTEN NSRSGSFLVD FTAYPNLTEG AWPNTRSSER GWDKTTASGK 240 YLQSPWLNSS ENPTSELVLQ GSAARATSFS GPGIPSRNCF TGVSDSGGAL SLLSNESWGS 300 RNQPSGLGVN SLVNTDGGHT VQPSGSHAAP INFSGPLWGF KGNEASSTSH DMPRNLGLGQ 360 LSHHAVNQYS AELGMPQPSG RQYLDLEHSK GYDSSVQNVH WTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 73 | 141 | 16 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073299 | 0.0 | LC073299.1 Nicotiana tabacum NtabSPL9b mRNA for squamosa promoter binding protein NtabSPL9b, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019243037.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K9ZXV1 | 0.0 | A0A2K9ZXV1_PETHY; Squamosa promoter binding-like protein 9a | ||||
STRING | XP_009612109.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-46 | squamosa promoter binding protein-like 9 |