PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00835g00013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 265aa MW: 29086.1 Da PI: 7.9382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00835g00013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.2e-11	197	238	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR ri +++ +L++l+P+ ++ + a++L +AveYIk+Lq Peinf101Scf00835g00013.1 197 QVRRTRISERMRKLQDLVPNM----DTQTNTADMLDLAVEYIKDLQ 238 67****************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.85E-11	187	240	No hit	No description
PROSITE profile	PS50888	12.614	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-8	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-13	197	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-8	197	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-14	200	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
PSTFLENYCD DEVVKNGNNK GKKNNGSSSK FNLGLEEGNK AMVNGFVALS SQLPPPYPRQ 60 NSSTQVGSNN LMRQNSSPAG LFSHLNSQNG YGVGDYRMSN GANGDMVSPT SRLKGQLSFP 120 SGAPTSSLGM LSRISEVENE SSITTSLDDD KSGDGNSEAQ LYNSGLPFAS WSRDASHFQE 180 SFTGHKRELD REVANVQVRR TRISERMRKL QDLVPNMDTQ TNTADMLDLA VEYIKDLQKQ 240 YKSLTDCRAN CKCSAMQKSV SNQRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019243015.1	6e-99	PREDICTED: transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	1e-35	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1J6J356	1e-97	A0A1J6J356_NICAT; Transcription factor bhlh130
STRING	XP_009768432.1	3e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-38	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]